New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1748689 =	69 (1.090)	4 (0.070)	4/254	NT	6.4%	intergenic (‑22/‑310)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748732 =	51 (0.840)					intergenic (‑65/‑267)	PP_1548/PP_5744	hypothetical protein/hypothetical protein

ATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748842‑1748689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGC  >  NC_002947/1748732‑1748879                                                                                                                                                                                                                                                                                                                ATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGG                                                                                                                                                           <  2:203184/149‑1      CCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGTCCTTGGCAACAGGGCCAGACGGGAAAT                                                                                                                                                       >  3:279687/1‑148             GCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAA                                                                                                                                                         >  3:216802/1‑139             GCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAA                                                                                                                                                         >  3:221747/1‑139             GCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAA                                                                                                                                                         <  4:216802/139‑1             GCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAA                                                                                                                                                         <  4:221747/139‑1                                      TTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGAGTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGA                                                                                                                                                          >  6:385486/1‑113                                                                                                           ACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCT                                                 >  8:177178/1‑149                                                                                                            CACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTG                                                >  8:53579/1‑149                                                                                                             ACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGG                                               >  1:153901/1‑149                                                                                                                                    GCAACAGGGCCAGACGGGAAATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTGCTGGTTTTTAAA                        <  2:153901/149‑1                                                                                                                                                       AATCGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAATGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCGGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGC     >  4:305434/1‑149                                                                                                                                                          CGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGC  >  6:101031/1‑149                                                                                                                                                                                                                                                                                                                ATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGGAAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748842‑1748689 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcGGTGTTGCTCAGCAAGCCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTACGTTGCGTAACGTCCACCAGAACTCAATCGCCGGATTAACTCGGCGCCTGGTGGCTCATCTGCTGGTTTTTAAAGAGCGGTGGCTGCCGGAGCTGC  >  NC_002947/1748732‑1748879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.