Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_002947	2,306,316	Δ85 bp	70.2%	coding (157‑241/1719 nt)	PP_2028 ←	TPR repeat‑containing protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2306315	15 (0.240)	33 (0.560)	32/248	NT	70.2%	coding (242/1719 nt)	PP_2028	TPR repeat‑containing protein
	?	NC_002947	2306401 =	14 (0.240)					coding (156/1719 nt)	PP_2028	TPR repeat‑containing protein

TGTCGCGGCGGTGTTCAAGCAGGTCGAGGATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2306163‑2306315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATTGGGGCCAC  >  NC_002947/2306401‑2306545                                                                                                                                                                                                                                                                                                            TGTCGCGGCGGTGTTCAAGCAGGTCGAGGATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGC                                                                                                                                                       >  1:369627/1‑149         CGGTGTTCAAGCAGGTCGAGGATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCA                                                                                                                                               <  1:301408/149‑1                   GCAGGTCGAGGATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTA                                                                                                                                     <  7:300695/149‑1                             GATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAA                                                                                                                           <  4:96244/149‑1                                       CGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGC                                                                                                                 <  5:162193/149‑1                                       CGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGG                                                                                                                             >  4:224591/1‑137                                       CGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGG                                                                                                                             <  3:224591/137‑1                                        GGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGG                                                                                                                  >  4:335134/1‑147                                           CCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAA                                                                                                             <  2:369627/149‑1                                                 CCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATC                                                                                                        <  2:352028/148‑1                                                    GGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGC                                                                                                     >  8:71541/1‑148                                                             GCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGG                                                                                           >  7:359719/1‑149                                                                     TCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTG                                                                                   >  1:260036/1‑149                                                                       CTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCG                                                                                 >  5:264940/1‑149                                                                       CTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGC                                                                                  <  8:359719/148‑1                                                                          GGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGC                                                                                <  7:71541/147‑1                                                                             GAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTG                                                                           >  1:16677/1‑149                                                                                 ATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCA                                                                        >  4:206051/1‑148                                                                                     GCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGT                                                                    <  3:206051/148‑1                                                                                        GGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGT                                                                <  2:260036/149‑1                                                                                        GGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTG                                                                 >  1:353873/1‑148                                                                                             AGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAG                                                            >  6:33508/1‑148                                                                                                     CAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCC                                                   <  2:16677/149‑1                                                                                                             CCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGG                                           <  6:264940/149‑1                                                                                                              CAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGG                                           >  6:203533/1‑148                                                                                                                  GGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACC                                      <  5:33508/149‑1                                                                                                                    GTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGTCGAGCACGGGAACCGC                                    >  6:213887/1‑149                                                                                                                    GTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGC                                    <  3:303088/149‑1                                                                                                                        GCCGGGCGCTGACTGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCC                                                       <  5:295245/126‑1                                                                                                                        GCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAG                                 >  3:362509/1‑148                                                                                                                        GCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCC                                                       >  6:295245/1‑126                                                                                                                           GGGCGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGC                             >  7:174429/1‑149                                                                                                                              CGCTGACGGCTTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAG                          <  3:335134/149‑1                                                                                                                                        TTTCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCG                  >  6:102125/1‑147                                                                                                                                          TCTTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCA                <  5:284406/147‑1                                                                                                                                            TTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCA            >  2:346743/1‑149                                                                                                                                            TTCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCA            >  7:189466/1‑149                                                                                                                                             TCCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCAT           >  7:267333/1‑149                                                                                                                                              CCAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCAT           <  4:362509/148‑1                                                                                                                                               CAGCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATT          <  8:174429/148‑1                                                                                                                                                 GCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATTGGG       <  5:203533/149‑1                                                                                                                                                 GCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGG                     <  5:15089/135‑1                                                                                                                                                 GCCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGG                     >  6:15089/1‑135                                                                                                                                                  CCGCTGCCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATTGGGG      <  2:353873/149‑1                                                                                                                                                        CCGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGTCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATTGGGGCCAC  >  1:189041/1‑147                                                                                                                                                                                                                                                                                                            TGTCGCGGCGGTGTTCAAGCAGGTCGAGGATCTTGCGCCGGGCCTGTTCCAGGCGGTTGGGCGGGCTGTCCTCGGCGAGCATTTGCGGGGTCAGTTCGAGCAGGATCACCAGCGGGTCGGCCGGGCGCTGACGGCTTTCTTCCAGCCGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2306163‑2306315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgccGCCACCCAGCAGTACACCGTGGAAGGCTGGCGGCAGAATCATCTGCCAGCGCCCGGCGCGCTTGCGCCGGTGCCACAGTTTGTACAGCAGCCAGCCGAGCACGGGAACCGCCAGCAGCCAGAGCGGGCGCAGCCATTGGGGCCAC  >  NC_002947/2306401‑2306545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.