| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2772500 = | 50 (0.790) | 3 (0.050) | 3/258 | NT | 5.8% | coding (316/906 nt) | PP_2425 | AraC family transcriptional regulator |
| ? | NC_002947 | 2772541 = | 49 (0.800) | coding (275/906 nt) | PP_2425 | AraC family transcriptional regulator | |||||
ATCGTGGCCCAGGGCAGCAAGCTGGCACGCCTGGGGCCGCGTACCCTGGAGTACGGTGCAGGGCATTACCTGGTGCAGGCGTTGTCGGTGCCGTTCATGTGTGAAACCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2772650‑2772500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGC > NC_002947/2772541‑2772686 agCGTGTCCCAGGGCAGCAAGCTGGCACGCCTGGGGCCGCGTACCCTGGAGTACGGTGCAGGGCATTACCTGGTGCAGGCGTTGTCGGTGCCGTTCATGTGTGAAACCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGG < 4:52412/146‑1 TCGTGGCCCAGGGCAGCAAGCTGGCACGCCTGGGGCCGCGTACCCTGGAGTACGCTGCAGGGCATTACCTGGTGCAGGCGTTGTCCGTGCCGTTCATGTGTGAAACCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGG > 6:297342/1‑148 AACCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGG > 4:184346/1‑149 CCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGC > 2:308450/1‑149 CCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGA < 1:308450/148‑1 ggaAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATCAGGCTGGGATCGTAAATCTGTGGGCTGCTGG > 6:95258/4‑149 GCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGC > 2:345714/1‑149 ATCGTGGCCCAGGGCAGCAAGCTGGCACGCCTGGGGCCGCGTACCCTGGAGTACGGTGCAGGGCATTACCTGGTGCAGGCGTTGTCGGTGCCGTTCATGTGTGAAACCTTTGCCACCCGCGAGGCGCCGCTGTTGGGCGTGGCGGTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2772650‑2772500‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGC > NC_002947/2772541‑2772686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |