New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2772500 =	50 (0.790)	3 (0.050)	3/258	NT	5.8%	coding (316/906 nt)	PP_2425	AraC family transcriptional regulator
	?	NC_002947	2772541 =	49 (0.800)					coding (275/906 nt)	PP_2425	AraC family transcriptional regulator

CCAGTGCCGCCGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGC  >  NC_002947/2772398‑2772686                                                                                                                                                  |                                                                                                                                                  gcccagggcagcaagctggcacgcctggggccgcgtaccctggagtacggtgcagggcattacctggtgcaggcgttgtcggtgccgttcatgtgtgaaaccttTGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAgg                                                                                                                                                >  2:308450‑M1/105‑149 (MQ=255)  cAGTGCCGCCGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGttt                                                                                                                                             <  4:342611/149‑1 (MQ=255)  cAGTGCCGCAGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGAGGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGttt                                                                                                                                             <  7:345644/149‑1 (MQ=255)  cAGTGCCGCAGAGGTCATCGATTGAGTTGTTTGCGCCTGCACTT‑CAGCGTCCGGTTCCAAGCCCATGCTC‑TGGACCAACTCGCCCATCACGCCACGGTCGATGCCAACCGCCACGCGCAACAGCGGCGCCTCTCGGGTGGCaaattttt                                                                                                                                             <  8:172023/149‑6 (MQ=255)   ccagggcagcaagctggcacgcctggggccgcgtaccctggagtacggtgcagggcattacctggtgcaggcgttgtcggtgccgttcatgtgtgaaaccttTGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGtt                                                                                                                                              >  4:184346‑M1/103‑149 (MQ=255)   aGTGCCGCCGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCAGCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTc                                                                                                                                            <  5:384222/149‑1 (MQ=255)     tGCCGCCGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTcac                                                                                                                                          <  3:380793/149‑1 (MQ=255)        cgccgAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTcacaca                                                                                                                                       >  6:209209/1‑149 (MQ=255)         gccgAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACAt                                                                                                                                      >  6:162116/1‑149 (MQ=255)         gccgAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACAt                                                                                                                                      <  5:162116/149‑1 (MQ=255)           cgAGGTCATCGAGGGCGTCGCGTGCTCCTGCACTT‑CAGCGTCCGGTGACAAGCCCATGCTC‑TGCACCAACTCCCCCAGCACGCCACGTGCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGa                                                                                                                                    <  8:349027/149‑1 (MQ=255)             aGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAAc                                                                                                                                  <  3:184760/149‑1 (MQ=255)              ggTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCCCACATGAACg                                                                                                                                 >  7:262952/1‑149 (MQ=255)                tCATCGATTGCGGGGTTTGCGCCTGCACTTCCAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACAAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACgg                                                                                                                                >  1:35450/1‑149 (MQ=255)                  aTCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTCGTGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAAGGGCa                                                                                                                              >  1:102704/1‑149 (MQ=255)                  aTCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCa                                                                                                                              <  3:340242/148‑1 (MQ=255)                  aTCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCa                                                                                                                              <  7:23723/148‑1 (MQ=255)                  aTCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCAc                                                                                                                             <  6:313148/149‑1 (MQ=255)                         gCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACaa                                                                                                                       <  3:141837/148‑1 (MQ=255)                                     ccTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAgg                                                                                                          >  3:308735/1‑149 (MQ=255)                                         cACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGGGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTaa                                                                                                       <  5:95854/148‑1 (MQ=255)                                          aCTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCTTGCACCAGGTAATg                                                                                                     <  1:347916/149‑1 (MQ=255)                                            tt‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCCCACATGAACGGCACCGACAACGCCTGCACCAGGTAATGcc                                                                                                   >  1:132736/1‑149 (MQ=255)                                                  cGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCa                                                                                              <  5:209209/149‑1 (MQ=255)                                                        gTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTAc                                                                                        >  4:231898/1‑149 (MQ=255)                                                             aaGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAg                                                                                   <  4:14590/149‑1 (MQ=255)                                                              aGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAgg                                                                                  <  2:164597/149‑1 (MQ=255)                                                                    tGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTAcgc                                                                            <  8:27351/149‑1 (MQ=255)                                                                            cACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGcc                                                                        <  2:132736/146‑1 (MQ=255)                                                                              ccAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAgg                                                                   >  6:397397/1‑149 (MQ=255)                                                                                 aCTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGt                                                                >  6:220688/1‑149 (MQ=255)                                                                                  cTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGCGTACGCGGCCCCAGGCGTg                                                               >  3:213602/1‑149 (MQ=255)                                                                                         accACGCCACGGTCGATGCCCAGCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACAGATGAACGGCAGCGACTACGCCTGCACCAGGTAATGCCCTTCTCCGTACTCCAGGGTACGCGTCGCCAGGCGTGGCAGCtt                                                        <  6:12613/147‑1 (MQ=255)                                                                                               ccACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGcc                                                  >  3:208522/1‑149 (MQ=255)                                                                                                cACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGccc                                                 <  5:118855/149‑1 (MQ=255)                                                                                                cACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGccc                                                 >  6:7521/1‑149 (MQ=255)                                                                                                cACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATACCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGccc                                                 >  5:395833/1‑149 (MQ=255)                                                                                                   aacctttgccacccgcgaggcgccgctgttgggcgtggcggtgggcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTgg                                              >  4:184346‑M2/48‑149 (MQ=255)                                                                                                     cctttgccacccgcgaggcgccgctgttgggcgtggcggtgggcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGc                                            >  2:308450‑M2/46‑149 (MQ=255)                                                                                                       gATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCa                                          <  4:308735/149‑1 (MQ=255)                                                                                                       gATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCa                                          >  8:296217/1‑149 (MQ=255)                                                                                                        aTGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCAc                                         >  5:378536/1‑149 (MQ=255)                                                                                                           cgcACCGCCACGCCCACCAGCGGCGGCTCGCGGGTGGCAAAGGTTTCACACATTAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGTGTACGCGGCCCCAGTCGTTCCAGCTTGCTGCCCTTGGCCACGa                                       <  2:116217/146‑1 (MQ=255)                                                                                                           ccacccgcgaggcgccgctgttgggcgtggcggtgggcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGa                                       <  1:308450‑M2/109‑1 (MQ=255)                                                                                                           CCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACGGACAACGCCTGCACCAGGTAATGCCCTGCAGCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGa                                       >  6:297342‑M1/1‑148 (MQ=255)                                                                                                            CCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGACacgct                                      <  4:52412‑M1/148‑3 (MQ=255)                                                                                                              aCCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCAt                                   <  7:296217/149‑1 (MQ=255)                                                                                                               ccGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATg                                  <  5:7521/149‑1 (MQ=255)                                                                                                               ccGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAAGTTTCACACATGAACGGCCCCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATg                                  >  1:267203/1‑149 (MQ=255)                                                                                                                   cACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGc                              >  6:75209/1‑149 (MQ=255)                                                                                                                      gCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTgg                           <  2:35450/149‑1 (MQ=255)                                                                                                                        ccAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTg                                                                                                <  3:202143/78‑1 (MQ=255)                                                                                                                        ccAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTg                                                                                                >  4:202143/1‑78 (MQ=255)                                                                                                                         cAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCa                                    <  5:64172/137‑1 (MQ=255)                                                                                                                         cAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCa                                    >  6:64172/1‑137 (MQ=255)                                                                                                                         cAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGtt                        >  3:80621/1‑149 (MQ=255)                                                                                                                            cAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCGACGATCATGAGGCTGGGTTCGt                     <  4:213602/149‑1 (MQ=255)                                                                                                                                              ggaaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATCAGGCTGGGATCGTAAATCTGTGGGCTGCTgg   >  6:95258‑M2/5‑149 (MQ=255)                                                                                                                                               gcaAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGc  >  2:345714‑M2/4‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCAGTGCCGCCGAGGTCATCGATTGCGGGGTTTGCGCCTGCACTT‑CAGCGTCCGGTGCCAAGCCCATGCTC‑TGCACCAACTCGCCCAGCACGCCACGGTCGATGCCCACCGCCACGCCCAACAGCGGCGCCTCGCGGGTGGCAAAGGTTTCACACATGAACGGCACCGACAACGCCTGCACCAGGTAATGCCCTGCACCGTACTCCAGGGTACGCGGCCCCAGGCGTGCCAGCTTGCTGCCCTGGGCCACGATCATGAGGCTGGGTTCGTAAATCTGTGGGCTGCTGGC  >  NC_002947/2772398‑2772686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.