| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3001704 = | 47 (0.740) | 3 (0.050) | 3/250 | NT | 6.2% | coding (428/696 nt) | PP_2625 | hypothetical protein |
| ? | NC_002947 | 3001787 = | 46 (0.770) | coding (511/696 nt) | PP_2625 | hypothetical protein | |||||
CAGCTTCCTGATCTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGAGCACTTGGCCGTTCTCCATCACTTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3001855‑3001704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcaaGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCTGGCC > NC_002947/3001787‑3001933 CAGCTTCCTGATCTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGAGCACTTGGCCGTTCTCCATCACTTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGG > 1:154388/1‑149 AGCTTCCTGATCTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGAGCACTTGGCCGTTCTCCATCACTTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGC < 4:203443/149‑1 AGCTTCCTGATCTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGAGCACTTGGCCGTTCTCCATCACTTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGG < 4:94103/148‑1 TTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAG > 2:90877/1‑149 GGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATC > 3:290425/1‑149 ACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCA < 4:290425/148‑1 TGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCT > 3:251541/1‑149 GCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCTG < 3:203443/148‑1 AAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCTGGCC > 3:153924/1‑149 AAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCTGGCC > 5:34873/1‑149 CAGCTTCCTGATCTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGAGCACTTGGCCGTTCTCCATCACTTGCCAGGGCGTCTCACGGGTAGACCAGCCCTCCCCGCTCAGGCGTACCTTGACCCAGCTTGCCTCGATCGGACGCCTGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3001855‑3001704‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggcaaGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGGAAGCTGATCGGTGCCCAGCGTATCGAGGTTGTGAGTGATCACGGCGAGGTCGACGGGCTGACCTTCGATGCGCAAGGCCTGGCC > NC_002947/3001787‑3001933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |