New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3001704 = | 47 (0.740) | 3 (0.050) | 3/250 | NT | 6.2% | coding (428/696 nt) | PP_2625 | hypothetical protein |
? | NC_002947 | 3001787 = | 46 (0.770) | coding (511/696 nt) | PP_2625 | hypothetical protein |
ATGACCTGACGTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGG > NC_002947/3001557‑3001849 | ggccaggccttgcgcatcgaaggtcagcccgtcgacctcgccgtgatcactcacaacctcgatacgctgggcaccgatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcactt > 3:153924‑M1/148‑149 (MQ=255) ggccaggccttgcgcatcgaaggtcagcccgtcgacctcgccgtgatcactcacaacctcgatacgctgggcaccgatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcactt > 5:34873‑M1/148‑149 (MQ=255) caggccttgcgcatcgaaggtcagcccgtcgacctcgccgtgatcactcacaacctcgatacgctgggcaccgatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcacTTGc < 3:203443‑M1/4‑1 (MQ=255) ccTGACGTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGc > 6:230576/1‑147 (MQ=255) ccTGACGTTTCGCATCGGGAGTCAGACCCAGGACCGGGCATGCGCGCCAGCGCTTGTGATTTCGGCCCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGAATACAGGCCATCTCCCGGCTACATCTGATTGCCa > 2:264151/1‑149 (MQ=255) aggccttgcgcatcgaaggtcagcccgtcgacctcgccgtgatcactcacaacctcgatacgctgggcaccgatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcacTTGCCa > 3:251541‑M1/144‑149 (MQ=255) cTGACGTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCAGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAg > 6:43476/1‑149 (MQ=255) gTTTCGCCTCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCGTGTGAGTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTCGCATAGAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTc < 8:250722/149‑1 (MQ=255) gTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTc > 3:389502/1‑149 (MQ=255) gTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTc < 8:132697/149‑1 (MQ=255) tCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCa < 4:67601/140‑1 (MQ=255) tCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCa > 3:67601/1‑140 (MQ=255) aTCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATc > 4:77809/1‑147 (MQ=255) aTCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGa < 5:346729/149‑1 (MQ=255) aTCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGa < 7:234231/149‑1 (MQ=255) ggAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAg > 8:143533/1‑146 (MQ=255) ggAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAg < 7:143533/146‑1 (MQ=255) gAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCaa < 3:77809/149‑1 (MQ=255) aGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAg > 1:234533/1‑149 (MQ=255) gTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGc < 4:73836/149‑1 (MQ=255) aGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTgg > 3:352277/1‑149 (MQ=255) aGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTgg < 5:230576/149‑1 (MQ=255) gACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGa < 5:236433/134‑1 (MQ=255) gACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGa > 6:236433/1‑134 (MQ=255) gggCAGTGGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGTCAATCAGTTGCATACAGGCCATCTCCGTGCTACAGCTGATTTCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGc < 1:264151/149‑1 (MQ=255) cAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAg < 3:36512/149‑1 (MQ=255) ttGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTgg > 2:35418/1‑149 (MQ=255) gtgATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGt < 6:52616/148‑1 (MQ=255) tgggcaccgatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcacTTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGt < 4:290425‑M1/68‑1 (MQ=255) ggCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTg < 4:389502/149‑1 (MQ=255) gcgcCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTga < 2:234533/149‑1 (MQ=255) gatcagcttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcacTTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGccc > 3:290425‑M1/73‑149 (MQ=255) ccATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGccc > 1:130433/1‑149 (MQ=255) catcgcatcgGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTTGTCTACCCGTGAGACGCCCt < 5:43476/149‑1 (MQ=255) gcatcgGGTGATGAACGCGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGc < 4:104314/148‑1 (MQ=255) cttcctgatctgctcgatggcgggcaggccccgcccggcatcgagcacttggccgttctccatcacTTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCaa > 2:90877‑M1/67‑149 (MQ=255) catcgGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCaa < 8:296775/149‑1 (MQ=255) gatgaACGTGCCTACATGGCAATCAGTTGCATATAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGga < 1:62484/149‑1 (MQ=255) atgaACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATg > 2:13071/1‑146 (MQ=255) aaCGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGaa < 2:130433/148‑1 (MQ=255) gTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACgg < 7:295002/148‑1 (MQ=255) gTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACgg > 8:295002/1‑148 (MQ=255) cATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGc > 2:245027/1‑149 (MQ=255) aaTCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATg > 3:235898/1‑149 (MQ=255) ttGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCcgggc > 5:141572/1‑149 (MQ=255) ttGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCcgggc > 6:352458/1‑149 (MQ=255) cATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCcgggcggg > 7:110283/1‑149 (MQ=255) tACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCcgggcggg < 7:372330/147‑1 (MQ=255) tACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCcgggcggg > 8:372330/1‑147 (MQ=255) ccATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGccc < 1:35418/149‑1 (MQ=255) cccGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCAt > 2:153596/1‑148 (MQ=255) cccGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGGCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCAt < 1:153596/148‑1 (MQ=255) cGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGGCGGGCAGGCCCCGCCCGGCATCGa < 1:13071/149‑1 (MQ=255) cAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGTCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGa < 1:245027/148‑1 (MQ=255) aGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGAt > 5:2235/1‑148 (MQ=255) gCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGAt > 8:341249/1‑147 (MQ=255) gCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCa < 4:352277/149‑1 (MQ=255) cTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAg > 4:250207/1‑149 (MQ=255) tGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAg > 5:164717/1‑148 (MQ=255) aTTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGCGCAGATCAgg > 6:316636/1‑147 (MQ=255) | ATGACCTGACGTTTCGCATCGGGAGTCAGACCCAGGACGGGGCAGGCGCGCCAGCGCTTGTGATTTCGGCGCCCGCCATCGCATCGGGTGATGAACGTGCCTACATGGCAATCAGTTGCATACAGGCCATCTCCCGGCTACAGCTGATTGCCAGGCGTCCGATCGAGGCAAGCTGGGTCAAGGTACGCCTGAGCGGGGAGGGCTGGTCTACCCGTGAGACGCCCTGGCAAGTGATGGAGAACGGCCAAGTGCTCGATGCCGGGCGGGGCCTGCCCGCCATCGAGCAGATCAGG > NC_002947/3001557‑3001849 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |