New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3446911	55 (0.870)	3 (0.050)	3/258	NT	5.6%	coding (225/552 nt)	PP_3066	lytic enzyme
	?	NC_002947	= 3446953	48 (0.780)					coding (267/552 nt)	PP_3066	lytic enzyme

TCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3446763‑3446911 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgACCATCGCCATCTGCTTCGGGCGTGTTGCCCAGGCGCTCAGCCAGCCG  <  NC_002947/3446953‑3446906                                                                                                                                                                                                       TCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTG                                                  >  5:159213/1‑149                                                GCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGACCATCGCCATCTGCTTCGGGCGTGTTGCCCAGGCGCTCAGCCAGC    <  7:356164/148‑1                                                 CCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGACCATCGCCATCTGCTTCGGGCGTGTTGCCCAGGCGCTCAGCCAGCCG  >  5:199321/1‑149                                                 CCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGACCATCGCCATCTGCTTCGGGCGTGTTGCCCAGGCGCTCAGCCAGCCG  <  6:199321/149‑1                                                                                                                                                                                                       TCAACGCTACTATGGGGAAGTTCGCCATCATCACGCGCCTGCGTATGGCCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3446763‑3446911 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgACCATCGCCATCTGCTTCGGGCGTGTTGCCCAGGCGCTCAGCCAGCCG  <  NC_002947/3446953‑3446906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.