New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3446911	55 (0.870)	3 (0.050)	3/258	NT	5.6%	coding (225/552 nt)	PP_3066	lytic enzyme
	?	NC_002947	= 3446953	48 (0.780)					coding (267/552 nt)	PP_3066	lytic enzyme

CCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGATGTCCGCCGGCTGG  >  NC_002947/3446811‑3447100                                                                                                                                               |                                                                                                                                                     ccGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGctc                                                                                                                                                >  4:113857/1‑149 (MQ=255) ccGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGctc                                                                                                                                                >  7:200038/1‑149 (MQ=255) ccGCGTTTCTCGCCCAGATCAGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGctc                                                                                                                                                >  8:321602/1‑149 (MQ=255)   gcgTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTa                                                                                                                                              <  1:264104/149‑1 (MQ=255)      tttCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcg                                                                                                                                           >  5:256648/1‑149 (MQ=255)         ctcGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtg                                                                                                                                         <  8:145144/148‑1 (MQ=255)          tcGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggt                                                                                                                                       >  3:161376/1‑149 (MQ=255)            gCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggtcg                                                                                                                                     >  5:140730/1‑149 (MQ=255)            gCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggtcg                                                                                                                                     >  5:269273/1‑149 (MQ=255)             cccAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTAtcgtggtcgt                                                                                                                                    <  3:113857/149‑1 (MQ=255)                aGATCGGTCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTg‑gg                                                                                                                                <  6:140730/149‑1 (MQ=255)                 gATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCTGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGc                                                                                                                               <  2:233718/149‑1 (MQ=255)                  aTCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCt                                                                                                                              <  8:280216/149‑1 (MQ=255)                         aTGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAg                                                                                                                       <  2:388690/149‑1 (MQ=255)                            aGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGt                                                                                                                     <  6:159213/148‑1 (MQ=255)                            aGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGt                                                                                                                     <  7:321602/148‑1 (MQ=255)                                 ggTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACggg                                                                                                               <  6:55821/149‑1 (MQ=255)                                       ttGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGCCGGGCCGCtt                                                                                                         >  6:30615/1‑149 (MQ=255)                                       ttGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACAGGCAGGCTGGCTGAGCGCCTGGGAAACACGCCCTAAGCAGATGGCGATTGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCtt                                                                                                         >  3:311683/1‑149 (MQ=255)                                                 tgcgtgAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAg                                                                                               <  6:256648/149‑1 (MQ=255)                                                  gcgtgAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGAAGGGCCGCTTCAATTACGAgg                                                                                              >  5:259633/1‑149 (MQ=255)                                                          ttGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCACGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGc                                                                                      >  4:30072/1‑149 (MQ=255)                                                             gCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCaa                                                                                                      <  5:195184/130‑1 (MQ=255)                                                             gCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCaa                                                                                                      >  6:195184/1‑130 (MQ=255)                                                             gCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAg                                                                                   <  3:30072/149‑1 (MQ=255)                                                               aaTGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGc                                                                                 >  4:97455/1‑149 (MQ=255)                                                                aTGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGTCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGct                                                                                >  1:160817/1‑149 (MQ=255)                                                                 tGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGCGGGCTGCAGCGAgggtg                                                                               >  4:95095/1‑146 (MQ=255)                                                                 tGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGctc                                                                               <  5:354763/149‑1 (MQ=255)                                                                   aCAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTGAGCTCTATCGTGGTCGAGAGGATTATCAAGGTGCCGGGCCGATGAAATTACGAGGCATGAAGCGAGGctct                                                                              >  1:126848/1‑149 (MQ=255)                                                                     aaGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCACCTCTATCGTGCTCGTG‑GGCTTATCCAGGAGACGGGCCGCTTCAATTACGAAGCCTGCAGCGAGGCTCTGtt                                                                           >  7:161640/1‑149 (MQ=255)                                                                       gTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCg                                                                         <  3:96012/149‑1 (MQ=255)                                                                             gTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACg                                                                   >  3:319642/1‑149 (MQ=255)                                                                                gAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTc                                                                >  6:212502/1‑149 (MQ=255)                                                                                   gTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTC‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGcc                                                             >  2:373073/1‑149 (MQ=255)                                                                                       gACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACTCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCt                                                         <  8:200038/149‑1 (MQ=255)                                                                                       gACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGc                                                          >  5:89515/1‑148 (MQ=255)                                                                                       gACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCt                                                         <  4:161376/149‑1 (MQ=255)                                                                                         cacCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTc                                                        >  7:75309/1‑148 (MQ=255)                                                                                                cggcTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTcagccggccggtgtcgtacttcgacaggtacttgtcattgccaagctcacgcacgtactgcaactgacccgactcatgcccgatctgggcgagaaacgcgg                                                 >  5:199321‑M2/1‑48 (MQ=255)                                                                                                cggcTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTcagccggccggtgtcgtacttcgacaggtacttgtcattgccaagctcacgcacgtactgcaactgacccgactcatgcccgatctgggcgagaaacgcgg                                                 <  6:199321‑M2/149‑102 (MQ=255)                                                                                                  gctggctgAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTcagccggccggtgtcgtacttcgacaggtacttgtcattgccaagctcacgcacgtactgcaactgacccgactcatgcccgatctgggcgagaaacgcggc                                                <  7:356164‑M2/148‑103 (MQ=255)                                                                                                   ctggctgAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCaga                                             <  6:269273/149‑1 (MQ=255)                                                                                                         gAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAgctgct                                       >  3:275221/1‑149 (MQ=255)                                                                                                            cgcCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGa                                    <  4:275221/149‑1 (MQ=255)                                                                                                                  ggCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGCGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATcc                              >  5:363261/1‑149 (MQ=255)                                                                                                                      acacGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGt                           >  5:138883/1‑148 (MQ=255)                                                                                                                         cGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCGAGAGCTGCTCGAGCATCCGGTCTAc                       <  3:26156/149‑1 (MQ=255)                                                                                                                         cGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTAc                       <  2:126848/149‑1 (MQ=255)                                                                                                                            ccGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCa                    >  4:64209/1‑149 (MQ=255)                                                                                                                              gAAGCAGATGGCGATGGTCAGCTCTATCGTGGGCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCGCGAGCATCCGGTCTACGCATc                  <  4:319642/149‑1 (MQ=255)                                                                                                                                 gCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGAt               <  3:157467/149‑1 (MQ=255)                                                                                                                                     aTGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGATGTcc           <  8:75309/149‑1 (MQ=255)                                                                                                                                          gATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCa                                               <  6:7454/108‑1 (MQ=255)                                                                                                                                          gATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCa                                               >  5:7454/1‑108 (MQ=255)                                                                                                                                              gTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGATGTCCGCCGGCTgg  <  3:64209/149‑1 (MQ=255)                                                                                                                                              gTCAGCTCTATCGTGGTCATG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGATGTCCGCCGGCTgg  >  7:373592/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     CCGCGTTTCTCGCCCAGATCGGGCATGAGTCGGGTCAGTTGCAGTACGTGCGTGAGCTTGGCAATGACAAGTACCTGTCGAAGTACGACACCGGCCGGCTGGCTGAGCGCCTGGGCAACACGCCCGAAGCAGATGGCGATGGTCAGCTCTATCGTGGTCGTG‑GGCTTATCCAGGTGACGGGCCGCTTCAATTACGAGGCCTGCAGCGAGGCTCTGTTCGGTGACGGTCGCCTGCTCAATACCCCAGAGCTGCTCGAGCATCCGGTCTACGCATCGATGTCCGCCGGCTGG  >  NC_002947/3446811‑3447100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.