New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4700092 =	53 (0.830)	5 (0.080)	4/254	NT	8.9%	coding (596/2655 nt)	kdpD	sensor protein
	?	NC_002947	4700129 =	52 (0.860)					coding (559/2655 nt)	kdpD	sensor protein

CGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700244‑4700092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACC  >  NC_002947/4700129‑4700274                                                                                                                                                                                                                                                                                                             CGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGC                                                                                                                                                        <  2:319225/149‑1    CAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGG                                                                                                                                                     <  6:169134/149‑1     AAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGC                                                                                                                                                    <  3:72186/149‑1       GGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGC                                                                                                                                                    >  3:316984/1‑147                                                                                                      GAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCC‑‑‑‑‑‑‑‑‑‑‑‑CGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGAC                                       >  1:345091/1‑149                                                                                                               TCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCG                                          >  8:148517/1‑149                                                                                                                 GAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGA                                        >  6:229999/1‑149                                                                                                                 GAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGA                                        >  6:319195/1‑149                                                                                                                  AACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGAC                                       <  7:148517/149‑1                                                                                                                                                     CAGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGTTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGA    <  3:235065/149‑1                                                                                                                                                      AGGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGAC   >  2:360888/1‑149                                                                                                                                                       GGCGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACC  <  1:253716/149‑1                                                                                                                                                                                                                                                                                                             CGACAAGGTCCGCGACATTACCGGCGTGCAAGTGCGCGAGACCCTGCCGGACTGGGTGCTGCAGGAAGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700244‑4700092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcGTTCGAGCAGCTCTCGCGGAGGCAGGTCGATCAGCACCAGCTCGAACGCTTCCTGCAGCACCCAGTCCGGCAGGGTCTCGCGCACTTGCACGCCGGTAATGTCGCGGACCTTGTCGTTGAGGCTTTCCAGGTGCTGGACGTTGACC  >  NC_002947/4700129‑4700274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.