New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5199879 =	50 (0.790)	3 (0.050)	3/260	NT	5.5%	coding (341/522 nt)	PP_4580	hypothetical protein
	?	NC_002947	5199919 =	55 (0.890)					coding (301/522 nt)	PP_4580	hypothetical protein

ACTACCGCAGCAGCGACGACCCGGTGTTCAACAGTGATGCCAACAGCATCGAAAGCCTGATGATCCGCAACGAACTGCTGGAAAACGAATGGCAGGTGCTGCAAGGGTCATGGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5200029‑5199879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTA  >  NC_002947/5199919‑5200027                                                                                                                                                                                                                                                                      ACTACCGCAGCAGCGACGACCCGGTGTTCAACAGTGATGCCAACAGCATCGAAAGCCTGATGATCCGCAACGAACTGCTGGAAAACGAATGGCAGGTGCTGCAAGGGTCATGGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGAC                                                                                                                 <  6:75203/149‑1                                                                                                            TCATGGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGACCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGC      >  4:139407/1‑149                                                                                                               TGGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGACCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGT   >  6:122685/1‑149                                                                                                                GGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGACCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTA  >  4:138882/1‑149                                                                                                                                                                                                                                                                      ACTACCGCAGCAGCGACGACCCGGTGTTCAACAGTGATGCCAACAGCATCGAAAGCCTGATGATCCGCAACGAACTGCTGGAAAACGAATGGCAGGTGCTGCAAGGGTCATGGGCCGGGCGTACCTGGCATGTGCTGGTACAGGCCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5200029‑5199879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGGTA  >  NC_002947/5199919‑5200027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.