New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5199879 =	50 (0.790)	3 (0.050)	3/260	NT	5.5%	coding (341/522 nt)	PP_4580	hypothetical protein
	?	NC_002947	5199919 =	55 (0.890)					coding (301/522 nt)	PP_4580	hypothetical protein

CCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGG  >  NC_002947/5199732‑5200025                                                                                                                                                    |                                                                                                                                                   ccgcccATGATCAGCCAGCCAATCCCCAGCAAGTTGCTTTCGACCACAAAGGCGAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCgg                                                                                                                                                   <  2:104398/149‑1 (MQ=255)  cgcccAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCggg                                                                                                                                                  <  3:248871/149‑1 (MQ=255)           tCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGt                                                                                                                                         <  8:27805/149‑1 (MQ=255)             agccagccAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTAc                                                                                                                                       <  3:198127/149‑1 (MQ=255)              gccagccaATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTAc                                                                                                                                       >  4:84941/1‑148 (MQ=255)                 agccaATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAACCCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGCATCTGGTAGGTGTAGCCATGGAGGGTTTCTTCACGCAACTGCCGGTCGGCCTGTAGCAgg                                                                                                                                   >  8:288980/1‑148 (MQ=255)                   ccaATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGcac                                                                                                                                 <  1:291738/149‑1 (MQ=255)                     aaTCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACAt                                                                                                                               <  1:351882/149‑1 (MQ=255)                                  aGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGccc                                                                                                                  >  7:243261/1‑149 (MQ=255)                                      tttCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGcc                                                                                                              >  8:75701/1‑149 (MQ=255)                                       taccgcagcagcgacgacccggtgttcaacagtgatgccaacagcatcgaaagcctgatgatccgcaacgaactgctggaaaacgaatggcaggtgctgcaagggtcatGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGccc                                                                                                             >  4:138882‑M1/110‑149 (MQ=255)                                        accgcagcagcgacgacccggtgttcaacagtgatgccaacagcatcgaaagcctgatgatccgcaacgaactgctggaaaacgaatggcaggtgctgcaagggtcatGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCa                                                                                                            >  6:122685‑M1/109‑149 (MQ=255)                                           gcagcagcgacgacccggtgttcaacagtgatgccaacagcatcgaaagcctgatgatccgcaacgaactgctggaaaacgaatggcaggtgctgcaagggtcatGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGa                                                                                                         >  4:139407‑M1/106‑149 (MQ=255)                                             cacaAAGGCCAGCACAGAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGAcc                                                                                                       >  5:6853/1‑149 (MQ=255)                                               caAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCCCGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCt                                                                                                     >  7:178675/1‑149 (MQ=255)                                               caAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCt                                                                                                     >  3:184791/1‑149 (MQ=255)                                                aaaGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCgg                                                                                                                <  6:119636/137‑1 (MQ=255)                                                aaaGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCgg                                                                                                                >  5:119636/1‑137 (MQ=255)                                                aaaGGCCAGCACAAAACCAGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCtt                                                                                                    >  7:218258/1‑149 (MQ=255)                                                       aGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCAc                                                                                             >  3:240304/1‑149 (MQ=255)                                                          acaAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTAc                                                                                                                                       <  1:156185/104‑1 (MQ=255)                                                          acaAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTAc                                                                                                                                       >  2:156185/1‑104 (MQ=255)                                                           caAAACCGGCACGCACACCCCTGGCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGc                                                                                         <  3:147558/149‑1 (MQ=255)                                                            aaaaCCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGc                                                                                         >  2:190842/1‑148 (MQ=255)                                                                ccGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTc                                                                                    <  8:243261/149‑1 (MQ=255)                                                                      accACACCCCAGCCAAACGCCTCGGCTACCAGCAGAATCTTGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTc                                                                              <  8:157148/148‑1 (MQ=255)                                                                         acacCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCCCGCAACTGCTGGTCGGCCTGTACCCGAACATGCCAGGTACGCCCGGCCGATGACCGTTGAAGCGCCTGCCAGTGGTTTTGcag                                                                           >  4:234955/1‑149 (MQ=255)                                                                         acacCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCcag                                                                           >  4:121373/1‑149 (MQ=255)                                                                             cccAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGt                                                                       <  7:75701/149‑1 (MQ=255)                                                                               cAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTc                                                                     >  4:45694/1‑149 (MQ=255)                                                                                   cAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTg                                                                 <  3:227620/149‑1 (MQ=255)                                                                                    aaTCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTCCCATTCGTTTTCCAGCAGTTCGTTGc                                                                <  1:10872/149‑1 (MQ=255)                                                                                         ccTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGatc                                                           <  1:190842/149‑1 (MQ=255)                                                                                         ccTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGat                                                            >  8:47760/1‑148 (MQ=255)                                                                                            cGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCTGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGatcat                                                         >  6:59736/1‑148 (MQ=255)                                                                                             gggTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGatcat                                                         >  5:82405/1‑147 (MQ=255)                                                                                             gggTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGatcat                                                         >  5:91075/1‑147 (MQ=255)                                                                                               gTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAgg                                                     >  5:286216/1‑149 (MQ=255)                                                                                                  ccAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCtt                                                  <  4:184791/149‑1 (MQ=255)                                                                                                    agcagAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTc                                                <  5:59736/149‑1 (MQ=255)                                                                                                    agcagAAGCTGGTAGCTGTAGCCATTGACGGTGTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGCCCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTGTc                                                <  6:282517/149‑1 (MQ=255)                                                                                                        gAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATg                                            <  8:304286/149‑1 (MQ=255)                                                                                                        gAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATg                                            <  7:288980/149‑1 (MQ=255)                                                                                                        gAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATg                                            >  3:128448/1‑149 (MQ=255)                                                                                                             tGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGtt                                       >  4:52652/1‑149 (MQ=255)                                                                                                             tGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGtt                                       >  4:70049/1‑149 (MQ=255)                                                                                                               gTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGtt                                       <  3:121373/147‑1 (MQ=255)                                                                                                                     gTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGAt                                             <  6:361335/135‑1 (MQ=255)                                                                                                                     gTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGAt                                             >  5:361335/1‑135 (MQ=255)                                                                                                                      tAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCAc                               <  8:218258/148‑1 (MQ=255)                                                                                                                           aTTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTg                          >  4:363036/1‑148 (MQ=255)                                                                                                                                gggTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACAcc                    <  7:47760/149‑1 (MQ=255)                                                                                                                                          aCGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCgc          >  1:237462/1‑149 (MQ=255)                                                                                                                                           cGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCgct         <  3:70049/149‑1 (MQ=255)                                                                                                                                            gCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCgctg        >  5:84445/1‑149 (MQ=255)                                                                                                                                                  gCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGAt                                             >  4:69848/1‑106 (MQ=255)                                                                                                                                                  gCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGAt                                             <  3:69848/106‑1 (MQ=255)                                                                                                                                                   cGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCgg  <  6:84445/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCGCCCAGGATCAGCCAGCCAATCCCCAGCAACAGGCTTTCGACCACAAAGGCCAGCACAAAACCGGCACCCACACCCCAGCCAATCGCCTCGGGTACCAGCAGAATCTGGTAGCTGTAGCCATTGAGGGTTTCTTCACGCAACTGCGGGTCGGCCTGTACCAGCACATGCCAGGTACGCCCGGCCCATGACCCTTGCAGCACCTGCCATTCGTTTTCCAGCAGTTCGTTGCGGATCATCAGGCTTTCGATGCTGTTGGCATCACTGTTGAACACCGGGTCGTCGCTGCTGCGG  >  NC_002947/5199732‑5200025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.