New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5207123 = | 67 (1.050) | 6 (0.100) | 6/256 | NT | 8.2% | coding (55/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
? | NC_002947 | 5207163 = | 70 (1.150) | coding (95/594 nt) | PP_4588 | nitroreductase family oxidoreductase |
TTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5207167‑5207123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGGC > NC_002947/5207163‑5207310 TTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGG > 7:286646/1‑149 TTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAG > 8:248876/1‑149 CGCTGATCGGCTCGGCGGTGAAGGCGCGTCGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCACTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCG > 2:164532/1‑149 GGCTCGGCGGTGAAGGCGCGTGGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGG > 5:273900/1‑136 GGCTCGGCGGTGAAGGCGCGTGGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGG < 6:273900/136‑1 GGCGACCAGCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTCAGCCTGCTGGTGCCCTTCAATC < 7:248876/149‑1 GCGAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGG > 7:317441/1‑149 GAAGAAACGCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCAATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGCCACGCCGAACTGGGAGCTTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGGC < 1:164532/149‑1 GAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGGC > 5:229494/1‑149 TTCTTCGCTGATCGGCTCGGCGGTGAAGGCGCGTGGCGACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5207167‑5207123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgAAGAAACCCTGCTGAGCTTCCTCGAAGCCGCCCGCTGGGCACCTTCGGCCTATAACTCGCAGCCTTGGCGCTTCCTTTATGCCCGCCGCGACACGCCGAACTGGGAGCGTTACCTGAGCCTGCTGGTGCCCTTCAATCGCAACTGGGC > NC_002947/5207163‑5207310 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |