New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5745143	63 (0.990)	4 (0.070)	3/252	NT	6.7%	coding (722/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745173	52 (0.860)					coding (692/2451 nt)	glgP	glycogen phosphorylase

GAAAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5744989‑5745143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcgTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACCGAG  <  NC_002947/5745173‑5745028                                                                                                                                                                                                                                                                                                               GAAAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCATCGGTACTGTAGGCGGCGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACATCAGCCACAGCCCCCAAATCGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTT                                                                                                                                                          >  1:254168/1‑149     AAGTAATCGTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAG                                                                                                                                                      <  6:396395/149‑1                                             TACTGTCGGCGGGGTAAAGCACACTCGAAATGCTCTCGGCAGGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGGCTGTGGCGCGGGCGGGCGCTGGAA                                                                                                              <  7:158590/149‑1                                                TGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAA                                                                                                              <  5:42723/146‑1                                                TGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAA                                                                                                              >  6:42723/1‑146                                                  TCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCTGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCT                                                                                                         <  2:77579/149‑1                                                                                                                                                     TCCAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTAC      >  7:54271/1‑149                                                                                                                                                       CAGCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACC     >  2:40447/1‑148                                                                                                                                                         GCGTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACCGAG  >  8:305554/1‑149                                                                                                                                                         GCGTCAACACCCTGCGCCTGTGGCGAGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGCCCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGTCAGTACCGAG  >  8:279519/1‑149                                                                                                                                                                                                                                                                                                               GAAAAAGTACTCCTGGCGAAGGCGCAGTTCCTGGCCGGCCTCGGTACTGTCGGCGGGGTAAAGCACACGCGAAATGCTCTCGGCACGCGCCACTTCAGCCACAGCCCCCAAATGGTCACCGGCGTTGAAGCGCTCCAGGTGCAGCTCTTCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5744989‑5745143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccagcgTCAACACCCTGCGCCTGTGGCGCGCGCGGGCGCTGGAAGAGCTGCACCTGGAGCGCTTCAACGCCGGTGACCATTTGGGGGCTGTGGCTGAAGTGGCGCGTGCCGAGAGCATTTCGCGTGTGCTTTACCCCGCCGACAGTACCGAG  <  NC_002947/5745173‑5745028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.