New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6059891	56 (0.880)	3 (0.050)	3/254	NT	5.6%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	47 (0.770)					coding (969/1404 nt)	PP_5311	signal transduction protein

GCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059790‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGT  <  NC_002947/6059929‑6059783                                                                                                                                                                                                                                                            GCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGAG                                                                                                      <  1:233830/149‑1       CCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAGCGTCAGCCCGGCCTCGGGGCGTTCTGCACGA                                                                                                       <  1:235421/143‑1       CCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAGTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGA                                                                                                       >  2:235421/1‑142                                                                                                 GTGCAGTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCA      >  7:344518/1‑149                                                                                                    CAGTAGCCCGTCCAGGTAG‑GTCAGGCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGGGGGGGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAt    <  6:98429/148‑2                                                                                                     AGTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCTATTGTTTCCAGTAAGGCTTAAACTGAAGAGGTTGGTCTTTGGGTAGGCTCAAGGT  >  8:97638/1‑149                                                                                                                                                                                                                                                            GCCTACCCAAAGACCAACCGCAGCAGGCCACGCCCTACTGGCAACAATCGATCTACACCGCCGCGATCATCGAAGGCCTCACCCGCGCCATGCCTCGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6059790‑6059891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagTAGCCCGGCCAGGTAG‑GTCAGCCCGGCCTCGGGGCGTTCTGCACGAGGCATGGCGCGGGTGAGGCCTTCGATGATCGCGGCGGTGTAGATCGATTGTTGCCAGTAGGGCGTGGCCTGCTGCGGTTGGTCTTTGGGTAGGCTCAAGGT  <  NC_002947/6059929‑6059783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.