| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 24 (0.380) | 12 (0.190) +GCG |
9/260 | NT | 20.7% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 5594166 | 70 (1.100) | intergenic (‑113/+32) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
TGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCAC‑GGCTTTGCCGGTGTT‑TCGGGCACG‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499363‑1499654 | tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACACGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTAGCGGGCCcg‑cccg > 5:164114/1‑147 (MQ=25) gCCTTTCAGAGCCTGAACGAAGCCTTGGCACCAGAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGGGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGGTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGAtt < 8:356912/149‑1 (MQ=21) gCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGGTTTGCCGGTGTTAGCGGGCCCGCCC‑GCTCCCCCAGACTGAtt > 6:302248/1‑149 (MQ=25) gCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGACACC‑GGCGTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGAtt < 2:77009/149‑1 (MQ=21) ttCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCa < 3:283052/149‑1 (MQ=21) cAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCAt < 2:31751/148‑1 (MQ=21) agCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAg < 1:240597/149‑1 (MQ=21) tGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCCCAGACTGATTGCCATTAAGCggg > 7:281275/1‑149 (MQ=21) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCGCGGTGCATGGCACC‑CGCGTTGCCGGTGTTAGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCGATCGCTa > 2:329290/1‑148 (MQ=21) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCCCGCCC‑GCTCCCCCAGACTGATTTCCAATAAGCGGGCCTATCGCTa > 3:79953/1‑148 (MQ=21) ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAc < 4:245245/149‑1 (MQ=21) ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACATGGTCCGCTGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTTACGGCCCGTTTTttgtt < 6:194891/149‑1 (MQ=21) ccAAACGGTGGGAGCGGGCGTGGCCGCGGAACAGGCGCCGCGGTGGATGGCACC‑GGCGTTGGCGGGGTTAGCGGGGCCGCCC‑GCGCCCCCAGCCGGGTTGCCATTAAGCGGGGCGATCGGGACAGTGACGGGCCGGTGTTTGTTGccgc > 6:108785/1‑147 (MQ=255) aaaCGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGc < 7:190922/149‑1 (MQ=21) aaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGc > 1:269393/1‑148 (MQ=21) ggTGGGAGGGGGCGGGCCCGCTAAACAGGCGCCGCGGGGCATGGCACG‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc < 3:381698/149‑1 (MQ=25) ggAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 5:302248/149‑1 (MQ=25) gcgCGGGCGTGCCCGCTAAACCGGCGCGGCGGCGCAGGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 8:289551/147‑1 (MQ=25) gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑TGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 7:297403/149‑1 (MQ=37) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCC‑GCTCCCACCGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 5:78080‑M1/90‑1 (MQ=255) gcgAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACG‑CCGGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCACCTTTTTTTTTTCCTCGCTAACTAATCATGACTCCCTTAg > 5:328470/1‑148 (MQ=25) cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 3:249817‑M1/90‑1 (MQ=255) aaaCAGGCGCCGCGGTGCA‑GGCCACGGGGTTTGCCGTTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACg < 5:15275/149‑1 (MQ=255) aCAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCt < 6:164114/149‑1 (MQ=37) aGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt > 3:43523/1‑149 (MQ=37) gccgcGGTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg < 7:41217/149‑1 (MQ=37) aaagccggtgccatgcaccgcggcgcctgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt > 1:337308‑M1/43‑103 (MQ=255) aaagccggtgccatgcaccgcggcgcctgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 2:337308‑M1/61‑1 (MQ=255) gTGCATGGCACC‑GGCTTTGCCGGTGTTCGCGGGCACGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAACCAGATc > 1:350054/1‑149 (MQ=37) tgccatgcaccgcggcgcctgtttcgcgggcacgcCC‑GCTCCCACCGACTGATTGCCATTAAGCGGGCCTCTCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGa > 6:78080‑M1/36‑149 (MQ=255) tgccatgcaccgcggcgcctgtttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGa > 3:136600‑M1/36‑149 (MQ=255) gccggtgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtct < 2:179230‑M1/129‑1 (MQ=255) ccggtgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtct > 2:269393‑M1/20‑148 (MQ=255) cggtgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCt < 1:70937‑M1/99‑1 (MQ=255) cggtgttcgcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCt > 2:70937‑M1/19‑117 (MQ=255) gcgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGAcgc > 4:79953‑M1/11‑149 (MQ=255) cgggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGAcgcg > 1:179230‑M1/10‑149 (MQ=255) gggcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTATTCCATGACgcgg < 7:47276‑M1/141‑1 (MQ=255) gcacgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACgcggcg < 2:389974‑M1/143‑1 (MQ=255) acgcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCa > 6:204001‑M1/5‑149 (MQ=255) gcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAg < 4:326326‑M1/146‑1 (MQ=255) gcCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAg < 7:216235‑M1/146‑1 (MQ=255) cc‑gcTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTGTTTTGTTGCCTCGCTAACGAATCATGCCTCCCTTTGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGa > 2:190106/1‑148 (MQ=255) | TGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCAC‑GGCTTTGCCGGTGTT‑TCGGGCACG‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499363‑1499654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |