New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1650927	43 (0.680)	3 (0.050)	3/254	NT	7.1%	coding (133/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	= 1650946	37 (0.610)					coding (114/2043 nt)	PP_1446	TonB‑dependent receptor

ATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTT  >  NC_002947/1650779‑1651073                                                                                                                                                     |                                                                                                                                                    aTGCGGGCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTGCACCCAGGCTGCCGTTCTGCTGTTGCAGCAGGTCGTCGCCTTCGAGCACGGTGCTGGG                                                                                                                                                     <  8:168860‑M1/149‑1 (MQ=255)    cGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTggggg                                                                                                                                                   <  5:103091/148‑1 (MQ=255)      gTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcgg                                                                                                                                                <  6:324291/149‑1 (MQ=255)       tCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGggcggc                                                                                                                                               <  2:168053/149‑1 (MQ=255)          ccATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAg                                                                                                                                            >  2:306465/1‑149 (MQ=255)            aTCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGtt                                                                                                                                          >  6:54155/1‑149 (MQ=255)               cAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTgg                                                                                                                                        <  3:365365/148‑1 (MQ=255)                aGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCg                                                                                                                                      <  1:202017/149‑1 (MQ=255)                aGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCg                                                                                                                                      >  4:230311/1‑149 (MQ=255)                    cgcgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTa                                                                                                                                  >  6:278470/1‑149 (MQ=255)                    cgcgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTa                                                                                                                                  <  2:195447/149‑1 (MQ=255)                      cgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTAcc                                                                                                                                >  2:254879‑M2/1‑147 (MQ=255)                           cACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTAGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCg                                                                                                                           >  5:365350/1‑149 (MQ=255)                                ggcggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTg                                                                                                                      >  7:16548/1‑149 (MQ=255)                                 gcggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGtaaccgccaactggccgcccccagcaccgtgc                                                                                                                     <  1:113255‑M1/149‑33 (MQ=255)                                   ggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCg                                                                                                                   <  7:108932/149‑1 (MQ=255)                                   ggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCg                                                                                                                   <  8:16548/149‑1 (MQ=255)                                      tGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGt                                                                                                                 >  5:181835/1‑148 (MQ=255)                                       ggCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtga                                                                                                               <  5:304965/149‑1 (MQ=255)                                        gcgcCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtg                                                                                                                <  1:53813/147‑1 (MQ=255)                                        gcgcCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTCGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtgat                                                                                                              <  6:365350/149‑1 (MQ=255)                                           ccAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTAGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGAc                                                                                                           >  6:209059/1‑149 (MQ=255)                                           caaGGGCAGAACCAGTTAGAGGCGAAACCGGTCTGCTTTTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTAGAGCACGGTGCTTGGGGCGGCGAGTTTGCGGTTACCCAGCGGGTTGGCGGTGATGAc                                                                                                           <  4:264320/147‑1 (MQ=255)                                              gggCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGtaaccgccaactggccgcccccagca                                                                                                                           <  6:24865‑M1/130‑27 (MQ=255)                                              gggCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGtaaccgccaactggccgcccccagca                                                                                                                           >  5:24865‑M1/1‑104 (MQ=255)                                                             gagGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTa                                                                                         <  1:371890/148‑1 (MQ=255)                                                                  gACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCct                                                                                   <  5:278470/149‑1 (MQ=255)                                                                    cacCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCctgg                                                                                 >  2:200067/1‑149 (MQ=255)                                                                     acCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCctggc                                                                                <  1:306465/149‑1 (MQ=255)                                                                              ctTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATg                                                                       >  3:328570/1‑149 (MQ=255)                                                                               ttGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATg                                                                       >  3:295717/1‑148 (MQ=255)                                                                                 gTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGca                                                                     <  3:5144/148‑1 (MQ=255)                                                                                  ttAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGAt                                                                        <  4:244360/144‑1 (MQ=255)                                                                                  ttAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATgagat                                                                   >  3:244360/1‑145 (MQ=255)                                                                                  ttAAGGGGTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGGTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGGTGGCGGTGATGACCTGCGGACTCAAGTTCTACGGCCTGGCTGGGGGATGca                                                                     <  1:40929/148‑1 (MQ=255)                                                                                    aaGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGcagc                                                                   >  2:165153/1‑147 (MQ=255)                                                                                           tCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCaga                                                           <  6:181835/148‑1 (MQ=255)                                                                                             aCCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGt                                                         <  5:209059/148‑1 (MQ=255)                                                                                             aCCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGt                                                         <  1:165153/148‑1 (MQ=255)                                                                                              cccAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGc                                                       >  6:224150/1‑149 (MQ=255)                                                                                               ccAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGc                                                       >  2:56133/1‑148 (MQ=255)                                                                                                                      agcagGTTGTCGCCTTCGAGCACGGTGCTGGGggc                                                                                                                                                  <  6:69654/35‑1 (MQ=255)                                                                                                                      agcagGTTGTCGCCTTCGAGCACGGTGCTGGGggc                                                                                                                                                  >  5:69654/1‑35 (MQ=255)                                                                                                                      agcagGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAg                               <  1:56133/149‑1 (MQ=255)                                                                                                                         agGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCgg                            >  6:124302/1‑149 (MQ=255)                                                                                                                           gTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGgtg                          <  3:230311/149‑1 (MQ=255)                                                                                                                              gTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGgtgtg                        >  3:171219/1‑148 (MQ=255)                                                                                                                                   cTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAg                   >  7:303730/1‑148 (MQ=255)                                                                                                                                         gCACGGTGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgccagccgc             <  1:113255‑M2/149‑118 (MQ=255)                                                                                                                                           aCGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggat          >  7:183082/1‑149 (MQ=255)                                                                                                                                             ggTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgg        <  5:124302/149‑1 (MQ=255)                                                                                                                                             ggTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgg        <  1:200067/149‑1 (MQ=255)                                                                                                                                               tGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccc                          <  6:24865‑M2/130‑105 (MQ=255)                                                                                                                                               tGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccc                          >  5:24865‑M2/1‑26 (MQ=255)                                                                                                                                               tGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgggg      >  6:315797/1‑149 (MQ=255)                                                                                                                                                    ggtaaccgccaactggccgcccccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgccagccgcccggtgatccg  >  2:254879‑M1/1‑2 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATGCGGTCGCCATCCAGGCCGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTT  >  NC_002947/1650779‑1651073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.