New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1650927	43 (0.680)	3 (0.050)	3/254	NT	7.1%	coding (133/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	= 1650946	37 (0.610)					coding (114/2043 nt)	PP_1446	TonB‑dependent receptor

CGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTGGCAGATGCTTTTTA  >  NC_002947/1650798‑1651092                                                                                                                                                     |                                                                                                                                                    cgcgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTa                                                                                                                                                     >  6:278470/1‑149 (MQ=255) cgcgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTa                                                                                                                                                     <  2:195447/149‑1 (MQ=255)   cgGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTAcc                                                                                                                                                   >  2:254879‑M2/1‑147 (MQ=255)        cACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTAGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCg                                                                                                                                              >  5:365350/1‑149 (MQ=255)             ggcggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTg                                                                                                                                         >  7:16548/1‑149 (MQ=255)                ggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCg                                                                                                                                      <  8:16548/149‑1 (MQ=255)                ggcTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCg                                                                                                                                      <  7:108932/149‑1 (MQ=255)                   tGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGt                                                                                                                                    >  5:181835/1‑148 (MQ=255)                    ggCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtga                                                                                                                                  <  5:304965/149‑1 (MQ=255)                     gcgcCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtg                                                                                                                                   <  1:53813/147‑1 (MQ=255)                     gcgcCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTCGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGtgat                                                                                                                                 <  6:365350/149‑1 (MQ=255)                        ccAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTAGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGAc                                                                                                                              >  6:209059/1‑149 (MQ=255)                        caaGGGCAGAACCAGTTAGAGGCGAAACCGGTCTGCTTTTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTAGAGCACGGTGCTTGGGGCGGCGAGTTTGCGGTTACCCAGCGGGTTGGCGGTGATGAc                                                                                                                              <  4:264320/147‑1 (MQ=255)                                          gagGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTa                                                                                                            <  1:371890/148‑1 (MQ=255)                                               gACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCct                                                                                                      <  5:278470/149‑1 (MQ=255)                                                 cacCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCctgg                                                                                                    >  2:200067/1‑149 (MQ=255)                                                  acCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCctggc                                                                                                   <  1:306465/149‑1 (MQ=255)                                                           ctTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATg                                                                                          >  3:328570/1‑149 (MQ=255)                                                            ttGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATg                                                                                          >  3:295717/1‑148 (MQ=255)                                                              gTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGca                                                                                        <  3:5144/148‑1 (MQ=255)                                                               ttAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGAt                                                                                           <  4:244360/144‑1 (MQ=255)                                                               ttAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATgagat                                                                                      >  3:244360/1‑145 (MQ=255)                                                               ttAAGGGGTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGGTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGGTGGCGGTGATGACCTGCGGACTCAAGTTCTACGGCCTGGCTGGGGGATGca                                                                                        <  1:40929/148‑1 (MQ=255)                                                                 aaGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGcagc                                                                                      >  2:165153/1‑147 (MQ=255)                                                                        tCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCaga                                                                              <  6:181835/148‑1 (MQ=255)                                                                          aCCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGt                                                                            <  1:165153/148‑1 (MQ=255)                                                                          aCCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGt                                                                            <  5:209059/148‑1 (MQ=255)                                                                           cccAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGc                                                                          >  6:224150/1‑149 (MQ=255)                                                                            ccAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGc                                                                          >  2:56133/1‑148 (MQ=255)                                                                                                   agcagGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAg                                                  <  1:56133/149‑1 (MQ=255)                                                                                                      agGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCgg                                               >  6:124302/1‑149 (MQ=255)                                                                                                        gTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGgtg                                             <  3:230311/149‑1 (MQ=255)                                                                                                           gTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGgtgtg                                           >  3:171219/1‑148 (MQ=255)                                                                                                                cTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAg                                      >  7:303730/1‑148 (MQ=255)                                                                                                                      gCACGGTGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccctggcgccagccgc                                <  1:113255‑M2/149‑118 (MQ=255)                                                                                                                        aCGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggat                             >  7:183082/1‑149 (MQ=255)                                                                                                                          ggTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgg                           <  5:124302/149‑1 (MQ=255)                                                                                                                          ggTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgg                           <  1:200067/149‑1 (MQ=255)                                                                                                                            tGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccc                                             <  6:24865‑M2/130‑105 (MQ=255)                                                                                                                            tGCTGGGGGCGGCCAGTTGGCGGTTAcccagcaccgtgctcgaaggcgacaacctgctgcaacagcagcacggcagcctgggtgaaacccttaacaagcagcccggtgtcgcctctacctggttcggccc                                             >  5:24865‑M2/1‑26 (MQ=255)                                                                                                                            tGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCatggggatgggg                         >  6:315797/1‑149 (MQ=255)                                                                                                                                     cggcCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTg                <  5:54155/149‑1 (MQ=255)                                                                                                                                      ggcCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTgg               <  4:295717/149‑1 (MQ=255)                                                                                                                                        ccAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTGGCa             <  4:328570/149‑1 (MQ=255)                                                                                                                                                  gTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTGGCAGATGCttttt   <  5:315797/149‑1 (MQ=255)                                                                                                                                                   ttACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTGGCAGATGCTTTTTa  <  5:199001/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGCGGATCACCGGGCGGCTGGCGCCAGGGCCGAACCAGGTAGAGGCGACACCGGGCTGCTTGTTAAGGGTTTCACCCAGGCTGCCGTGCTGCTGTTGCAGCAGGTTGTCGCCTTCGAGCACGGTGCTGGGGGCGGCCAGTTGGCGGTTACCCAGCGGGTTGGCGGTGATGACCTGCGG‑CTCAAGTTCTACGGCCTGGCTGGGGGATGCAGCCAGCCAGAGTGCGACGGCAAGGGGGGAAAGGCGAAGCGGTGTGTACAGCATGGGGATGGGGCGTTCCTTGGCAGATGCTTTTTA  >  NC_002947/1650798‑1651092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.