New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3008739 =	41 (0.650)	3 (0.050)	3/254	NT	6.7%	coding (356/1977 nt)	PP_2628	ABC transporter ATP‑binding protein
	?	NC_002947	3008793 =	44 (0.730)					coding (302/1977 nt)	PP_2628	ABC transporter ATP‑binding protein

GCGCAACATCAGGCGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGTACAAGCCCA  >  NC_002947/3008591‑3008887                                                                                                                                                     |                                                                                                                                                     gcgcAACATCAGGCGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCgg                                                                                                                                                      <  5:291846/149‑1 (MQ=255) gcgcAACATCAGGCGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTCACCACCACGACGATGCCGATCCCCCCCAGCACACGGCTTACCTCgg                                                                                                                                                      >  5:326096/1‑149 (MQ=255)  cttcccacccgacgaggtaccaccgccgcccgttggcctgttgcgcttcatgtgggcttgtacccgcggcgcccgtggctacatcctggcgctggcgctgctcagtgccggggtgtcgatatacgaagcctggctattcgcgttcctgg                                                                                                                                                     <  8:150129‑M1/2‑1 (MQ=255)         tCAGGCGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCaa                                                                                                                                                >  5:341561/1‑147 (MQ=255)              cGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTGcc                                                                                                                                         <  3:172352/149‑1 (MQ=255)                         ccAACGCTGCCGCAGCGGCAGGTTGATCGCGAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGTCCAACAGTACCGCctgcctgc                                                                                                                               <  6:204805/148‑1 (MQ=255)                         ccAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCTTGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCctgcctgc                                                                                                                               <  8:320631/148‑1 (MQ=255)                              gcagccgcagcGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGAc                                                                                                                         <  4:13863/149‑1 (MQ=255)                               cagccgcagcGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGAcg                                                                                                                        <  8:217116/149‑1 (MQ=255)                                agccgcagcGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGAcgc                                                                                                                       >  8:164198/1‑149 (MQ=255)                                               cttcatgtgggcttgtacccgcggcgcccgtggctacatcctggcgctggcgctgctcagtgccggggtgtcgatatacgaagcctggctattcgcgttcctGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGaccac                                                                                                        <  7:116694‑M1/47‑1 (MQ=255)                                                   ggttcAGCACCAGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCt                                                                                                      >  7:120337/5‑147 (MQ=255)                                                   ggttcAGCACCAGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCt                                                                                                      <  8:120337/143‑1 (MQ=255)                                                    cGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGc                                                                                                   >  5:82423/1‑149 (MQ=255)                                                      ccAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGcc                                                                                                  >  5:113454/1‑148 (MQ=255)                                                          cttgtacccgcggcgcccgtggctacatcctggcgctggcgctgctcagtgccggggtgtcgatatacgaagcctggctattcgcgttcctGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGa                                                                                             >  7:170091‑M1/92‑149 (MQ=255)                                                             gtacccgcggcgcccgtggctacatcctggcgctggcgctgctcagtgccggggtgtcgatatacgaagcctggctattcgcgttcctGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAAc                                                                                           >  8:116694‑M1/89‑148 (MQ=255)                                                              tGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAAcgc                                                                                         >  5:83791/1‑149 (MQ=255)                                                                 tGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGaa                                                                                      <  6:113454/149‑1 (MQ=255)                                                                 tGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGaa                                                                                      >  2:389031/1‑149 (MQ=255)                                                                      aaCCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAAcg                                                                                          <  8:123699/140‑1 (MQ=255)                                                                      aaCCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAAcg                                                                                          >  7:123699/1‑140 (MQ=255)                                                                        ccATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAg                                                                               >  8:199735/1‑149 (MQ=255)                                                                          aTGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAgg                                                                              >  4:253419/1‑148 (MQ=255)                                                                           tGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGAcgc                                                                                                                       >  7:39376/1‑106 (MQ=255)                                                                           tGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGAcgc                                                                                                                       <  8:39376/106‑1 (MQ=255)                                                                                cgcAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGt                                                                        <  3:253419/148‑1 (MQ=255)                                                                                cgcAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGt                                                                        <  1:267233/148‑1 (MQ=255)                                                                                 gcAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGtat                                                                      <  7:199735/149‑1 (MQ=255)                                                                                   aGCGCCACCAGCCCGATGCTGACCACCAGCACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTatat                                                                    <  6:326096/149‑1 (MQ=255)                                                                                    gcgcCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATc                                                                   <  6:341561/149‑1 (MQ=255)                                                                                      gcCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGa                                                                 <  6:92634/149‑1 (MQ=255)                                                                                       ccaccaGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGa                                                                 >  3:387225/1‑148 (MQ=255)                                                                                        caccaGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACAGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGaca                                                               >  3:235920/1‑149 (MQ=255)                                                                                                     cTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGag                                                  <  4:148246/149‑1 (MQ=255)                                                                                                       gACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGag                                                  >  1:362182/1‑147 (MQ=255)                                                                                                          caccaGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGcagcg                                             <  6:82423/149‑1 (MQ=255)                                                                                                                gACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGcagcgccagcg                                       >  4:244151/1‑149 (MQ=255)                                                                                                                   gATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGcagcgccagcgc                                      >  8:319373/1‑147 (MQ=255)                                                                                                                        cGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGCAACGCGAATAGCCAGGCTTCGTATATCGACACCCAGGCACTGAGAAGCGCCAGCGCCAGGAta                               >  7:273895/1‑148 (MQ=255)                                                                                                                         gATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATg                               >  6:191818/1‑148 (MQ=255)                                                                                                                           tCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAg                            >  8:116462/1‑149 (MQ=255)                                                                                                                              cccACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCa                         >  7:45704/1‑149 (MQ=255)                                                                                                                              cccACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCa                         >  3:260988/1‑149 (MQ=255)                                                                                                                                   aGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATAGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGgc                    >  7:188957/1‑149 (MQ=255)                                                                                                                                            cTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGt           <  3:244151/149‑1 (MQ=255)                                                                                                                                            cTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGt           <  7:116462/149‑1 (MQ=255)                                                                                                                                                 cTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGTACaa       <  1:389031/148‑1 (MQ=255)                                                                                                                                                 cTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGTACAAg      >  5:145038/1‑149 (MQ=255)                                                                                                                                                     GGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGTACAAGCCca  >  2:362182‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCGCAACATCAGGCGGTGAAAATCCCAACGCAGCCGCAGCGGCAGGTTGATCGCCAGCACCTGGTGCTGAACCATGGTGCGCAGCGCCACCAGCCCGATGCTGACCACCAGGACGATGCCGATCCCCCACAGCACACGGCTTTCCTCGGGGCCAACAGTACCGCCTGCCTGCCAGGACGCGAGCAGGTCGACCACCTGGCCCAGGAACGCGAATAGCCAGGCTTCGTATATCGACACCCCGGCACTGAGCAGCGCCAGCGCCAGGATGTAGCCACGGGCGCCGCGGGTACAAGCCCA  >  NC_002947/3008591‑3008887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.