New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3383565	58 (0.910)	20 (0.310)	17/266	NT	29.6%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4950858	37 (0.580)					intergenic (‑8/+149)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK

TATCGCATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATCTCTG  >  NC_002947/3383417‑3383712                                                                                                                                                         |                                                                                                                                                     tatCGCATAGATCAAACCTTCCTCAATGGATGGCAGAAGCGATTGGGCGCGAAGCAGTCTTTGCTTAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGAcccc                                                                                                                                                      <  8:283030/149‑1 (MQ=255)     gCATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATa                                                                                                                                                   <  2:8078/148‑1 (MQ=255)     gCATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCAAATCTACTGGTTTAAATACAATAGATTAGAGAACGAATGTCCTAATTTTTGCCATATCTC‑‑G‑G‑CATGACCCCAAAc                                                                                                                                                  >  5:108221/1‑149 (MQ=39)       aTAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCg                                                                                                                                                >  4:319685/1‑149 (MQ=255)            tCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCAt                                                                                                                                            >  2:50735/1‑148 (MQ=255)            tCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCAt                                                                                                                                            >  6:84455/1‑148 (MQ=255)             cAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatgg                                                                                                                                          >  2:121368‑M1/1‑137 (MQ=255)               aaCCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAag                                                                                                                                        <  4:112934/149‑1 (MQ=255)                       tCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAAAAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcg                                                                                                                                 >  2:181626‑M1/1‑127 (MQ=255)                         aaTGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGc                                                                                                                               >  6:196246/1‑148 (MQ=255)                              atggCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAAt                                                                                                                        >  1:236892/1‑149 (MQ=255)                                ggCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtca                                                                                                                        >  8:72640‑M1/1‑118 (MQ=255)                                  cTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGaaa                                                                                                                    <  1:22915/149‑1 (MQ=255)                                    gatgcgaTTGGGCGCGAAGCAGGCATTGCTGAGCAGGCGTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAAGGAATGTCCTAAGTTTTGCATTATCTC‑‑G‑G‑CATGACCCGttattggctgtgcgaagagcgacgcagtcaaagac                                                                                                                   >  4:102211‑M1/4‑114 (MQ=255)                                              ggCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTtc                                                                                                        <  5:87980/149‑1 (MQ=255)                                              ggCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTtc                                                                                                        <  3:81297/149‑1 (MQ=255)                                                 gcgAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTtctc                                                                                                      >  4:201672/1‑148 (MQ=255)                                                 gcgAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATAACGGCATGAAGCAGCGCTGC‑GATAATTAAAGGAGCCTTTTtctc                                                                                                      >  4:176930/1‑148 (MQ=255)                                                  cgAATCATTCTTTGCTGAGCATGGCTTCTAATCAACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTa                                                                                                    <  8:295895/149‑1 (MQ=255)                                                  cgAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTa                                                                                                    <  1:50735/149‑1 (MQ=255)                                                  cgAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTa                                                                                                    <  3:319685/149‑1 (MQ=255)                                                   gAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTtctc                                                                                                      >  1:32723/1‑146 (MQ=255)                                                     aGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGa                                                                                                  >  4:116350/1‑148 (MQ=255)                                                        aGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACt                                                                                              <  3:201672/149‑1 (MQ=255)                                                         gTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACt                                                                                              >  1:177826/1‑148 (MQ=255)                                                                  gAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATcc                                                                                     >  2:169078/1‑148 (MQ=255)                                                                      aGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCTGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCAccc                                                                                <  3:176930/149‑1 (MQ=255)                                                                          cTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTAt                                                                            <  2:32723/149‑1 (MQ=255)                                                                               aaTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGAG‑G‑AATGACCCCATACCGGCATGAACAACCGATGC‑GATATTGAAAGGAGCCTTTTTATCTAGATAATAAGCAATCCCACACGTAttcg                                                                         >  1:117737/1‑147 (MQ=255)                                                                               aaTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑GAGACATGACCCCATACCGCCATGAACCAGCGCTCC‑GATAATGAAAGTAGCCTATTTCTCTAGATACTCAGCCATCCCACCCGAAttcc                                                                         >  1:112566/1‑147 (MQ=255)                                                                                aTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgt                                                                       <  7:72640‑M1/149‑80 (MQ=255)                                                                                aTCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTc                                                                       <  6:236940/148‑1 (MQ=255)                                                                                aTCTACTCGTTTAAATACAATAGCTGAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCAATACCGGCATGAAGCAGCGCTGA‑GATAATGAAAGTAGCGTTTTTCTCTTGTTACTCAGCCATCCCACCCGTATAGCTCg                                                                      >  6:314234/1‑149 (MQ=38)                                                                                  cTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAAATTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGAATGAACCAGCGCTCC‑GATAATGAAAGTAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGAc                                                                    >  1:265331/1‑149 (MQ=255)                                                                                     cTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGAc                                                                    <  5:196246/146‑1 (MQ=255)                                                                                        gTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagccaaagaccccgccactaaaggcatactcaagctgatcctgctggctgtcgtcggcctgt                                                               >  3:288540‑M1/1‑62 (MQ=255)                                                                                        gTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCaa                                                               <  1:169078/148‑1 (MQ=255)                                                                                        gTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAAc                                                              >  1:111255/1‑149 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctg                                                          >  5:200634‑M1/1‑57 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctg                                                          <  1:121368‑M1/149‑93 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTctct                                                                                                     <  8:275194/105‑1 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTctct                                                                                                     >  7:275194/1‑105 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGaa                                                          <  3:116350/148‑1 (MQ=255)                                                                                             aaTACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCACATACCGGCATGAAGCATCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAg                                                         >  5:278108/1‑149 (MQ=255)                                                                                                  aaTAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGTAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCtt                                                      >  5:19254/1‑147 (MQ=255)                                                                                                  aaTAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCtt                                                      >  5:184481/1‑147 (MQ=255)                                                                                                  aaTAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCAATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTc                                                     >  1:177236/1‑148 (MQ=255)                                                                                                  aaTAGCTTAGAGAACGAAAGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCa                                                    <  5:84455/149‑1 (MQ=255)                                                                                                       cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaa                                                                                                                                      <  6:204581‑M1/63‑17 (MQ=255)                                                                                                       cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaa                                                                                                                                      >  5:204581‑M1/1‑47 (MQ=255)                                                                                                       cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGtt                                               <  2:177826/149‑1 (MQ=255)                                                                                                       cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGtt                                               >  1:99762/1‑149 (MQ=255)                                                                                                        ttAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGttt                                              >  1:382208/1‑149 (MQ=255)                                                                                                          agagAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGttt                                              <  2:112566/147‑1 (MQ=255)                                                                                                          agagAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGttt                                              <  2:117737/147‑1 (MQ=255)                                                                                                           gagaACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttc                                            >  1:63363‑M1/1‑43 (MQ=255)                                                                                                           gagaACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttc                                            >  2:188694‑M1/1‑43 (MQ=255)                                                                                                              aaCGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggt                                         >  6:46861‑M1/1‑40 (MQ=255)                                                                                                              aaCGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGCTAATAATGAAAGGAGCCTTTTTCTCTAAATACTCAGCCATCCCACACGTATTGCTCGAATACAACTGAAGCTACAGCGTTTCaaaa                                         >  1:314353/1‑146 (MQ=38)                                                                                                              aaCGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACt                                        >  3:167461/1‑149 (MQ=255)                                                                                                              aaCGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACt                                        >  6:224743/1‑149 (MQ=255)                                                                                                              aaCGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCGCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCACCTGAAGCTTCAGCGTTTCATACt                                        >  2:325448/1‑149 (MQ=255)                                                                                                                  aaTGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCGCttattggcatggcgaagagcgaagcaggcaaagaccccgccactaaaggcaaactcacgctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggc                                     <  3:102211‑M1/149‑114 (MQ=255)                                                                                                                   aTGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTgg                                   <  7:307670/149‑1 (MQ=255)                                                                                                                   aTGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATAATCAGCCATCCAACCCGAATTGCTCTACTCCAACTGAAGCTTCAGCGTTTCATACTGTTgg                                   >  7:127411/1‑149 (MQ=255)                                                                                                                         tAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATc                             >  6:252365/1‑149 (MQ=255)                                                                                                                         tAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATc                             >  2:183923/1‑149 (MQ=255)                                                                                                                            ttttttCCTTATCTC‑‑G‑G‑CATTACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAg                          <  7:307536/149‑1 (MQ=255)                                                                                                                              tttGCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggtt                          <  6:19474‑M1/148‑125 (MQ=255)                                                                                                                                 gCCTTATCTC‑‑G‑G‑CATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggttcat                       <  1:181626‑M1/148‑128 (MQ=255)                                                                                                                                   cTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCtt                                                      <  8:281621/114‑1 (MQ=255)                                                                                                                                    ttATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACGCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATcgcg                  >  8:62314/1‑149 (MQ=255)                                                                                                                                    ttATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATcgcg                  >  2:264596/1‑149 (MQ=255)                                                                                                                                       tctc‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGcc                <  2:236892/148‑1 (MQ=255)                                                                                                                                       tctc‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCt               >  6:328112/1‑149 (MQ=255)                                                                                                                                             g‑g‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAg            <  2:111255/148‑1 (MQ=255)                                                                                                                                                 cATGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggttcatcatgcacaagagc          <  5:46861‑M1/149‑141 (MQ=255)                                                                                                                                                   tGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggttcatcatgcacaagagc          >  1:215313‑M1/1‑7 (MQ=255)                                                                                                                                                   tGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggttcatcatg                   <  1:9359‑M1/138‑132 (MQ=255)                                                                                                                                                   tGACCCCttattggcatggcgaagagcgaagcagtcaaagaccccgccactaaaggcaaactcaagctgatcctgctggctgtcgtcggcctgttgctggcgatcggcctttcggtgggcgctacctggttcatcatg                   >  2:9359‑M1/1‑7 (MQ=255)                                                                                                                                                   tGACCCCATACCGGCATGATGCAGAGCTGC‑GATAATTAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTAGACTCCAACTGAAGCTTCAGGGTTTCTTACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAAt       <  5:314234/149‑1 (MQ=255)                                                                                                                                                      ccccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAAtctc    >  8:66134/1‑149 (MQ=255)                                                                                                                                                       cccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATctct   <  5:252365/149‑1 (MQ=255)                                                                                                                                                       cccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATctct   >  1:387638/1‑149 (MQ=255)                                                                                                                                                       cccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATctct   <  4:167461/149‑1 (MQ=255)                                                                                                                                                        ccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCGATCCCACCCGTATTGCTCGACTCCTACTGAAGCTTCAGGGTTTCATACTGTTGGCGGATCGATGCATCGCGCCTGAGCAAATCTCTg  <  2:314353/149‑1 (MQ=255)                                                                                                                                                        ccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATctct   >  7:75468/1‑148 (MQ=255)                                                                                                                                                        ccATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATCTCTg  <  8:75468/149‑1 (MQ=255)                                                                                                                                                         |                                                                                                                                                     TATCGCATAGATCAAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTC‑‑G‑G‑CATGACCCCATACCGGCATGAAGCAGCGCTGC‑GATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCTGAGCAAATCTCTG  >  NC_002947/3383417‑3383712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.