New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3383565	58 (0.910)	20 (0.310)	17/266	NT	29.6%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4950858	37 (0.580)					intergenic (‑8/+149)	fliL/fliK	flagellar protein FliL/flagellar hook‑length control protein FliK

CTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTT  >  NC_002947/4950716‑4951005                                                                                                                                               |                                                                                                                                                    ctcgctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCcgtc                                                                                                                                               <  7:214076/149‑1 (MQ=255)    gctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatg                                                                                                                                            <  5:46861‑M2/149‑10 (MQ=255)    gctcTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                              >  1:215313‑M2/1‑140 (MQ=255)             cATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                              >  2:9359‑M2/1‑131 (MQ=255)             cATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtca                                                                                                                                              <  1:9359‑M2/138‑8 (MQ=255)             aagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCggggg                                                                                                                                   <  3:333468‑M2/23‑1 (MQ=255)               tgatgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACACCCAGCAGGAGCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGtt                                                                                                                                 <  7:139052/149‑1 (MQ=255)                 atgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggc                                                                                                                                <  1:181626‑M2/148‑22 (MQ=255)                 atgaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTc                                                                                                                                <  6:9309/148‑1 (MQ=255)                 atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtccaaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTc                                                                                                                                >  4:372415‑M2/123‑148 (MQ=255)                  tgaACCAGGTAGCGCCCACAGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGAGTGCTTCGCTCTTCGCCATGCCATTAATCCGTCGTCCATCGGGGGTTCa                                                                                                                               >  6:54091/1‑148 (MQ=255)                   gaACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCAACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCa                                                                                                                               >  1:279654/1‑147 (MQ=255)                    aaCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaa                                                                                                                             <  6:19474‑M2/148‑25 (MQ=255)                    aaCCAGGTAGCGCCCAACGAAAGGCCCATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCGTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGGCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                            >  4:244279/1‑149 (MQ=255)                     aCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                            >  7:26417/1‑148 (MQ=255)                     aCCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAg                                                                                                                            >  7:308657/1‑148 (MQ=255)                      ccAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGga                                                                                                                          <  7:240380/149‑1 (MQ=255)                          gTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCaataa                                                                                                                                                     >  1:2759/1‑118 (MQ=255)                          gTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCaataa                                                                                                                                                     <  2:2759/118‑1 (MQ=255)                             ggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAAtggc                                                                                                                   >  2:52171‑M2/111‑149 (MQ=255)                               gcCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCGTGAGTTTGCCTTTAGTGGCGGGGTCTTTGCCTGCTTCGCTCTTCGCCATGCCAATAAgcggtcatgccgagataaggcaaaaattaggacatt                                                                                                                 <  3:102211‑M2/149‑37 (MQ=255)                                cccACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttg                                                                                                                >  2:202985/1‑149 (MQ=255)                                 ccACCGAAAGGCCGATCGCCAGCTACAGGCCGACGACAGCGAGCAGGTTGAGCGTGAGTTTGCCGGTAGTGGCGGGGTCGTTGACTGCTTCGCTCTTCGCCATGCGAATTCTCCGTCGTCCATCGGGGGTTCTCTGGAGAAtggcttgg                                                                                                               >  8:217642/1‑149 (MQ=255)                                 ccACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCG‑CCATCGGGGGTTCAAAGGAGAAtggcttggc                                                                                                              >  2:63577/1‑149 (MQ=255)                                  cACCGAAAGGACGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttggc                                                                                                              <  2:279654/149‑1 (MQ=255)                                   aCCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgtt                                                                                                             >  6:46861‑M2/1‑109 (MQ=255)                                   aCCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAAtggcttggct                                                                                                             >  4:370762/1‑149 (MQ=255)                                    cagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATggcttggctt                                                                                                            <  4:65476‑M2/46‑1 (MQ=255)                                     cGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATggcttggctt                                                                                                            >  1:198077/1‑148 (MQ=255)                                      gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctc                                                                                                          >  2:188694‑M2/1‑106 (MQ=255)                                      gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctc                                                                                                          >  1:63363‑M2/1‑106 (MQ=255)                                      gAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCACCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                          <  6:385941/149‑1 (MQ=255)                                            ccGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGCTTGGCTTGAGCAAgt                                                                                                    <  2:322829/149‑1 (MQ=255)                                             cGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAgtg                                                                                                   <  8:347226/149‑1 (MQ=255)                                              gATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAgtgt                                                                                                  <  8:26417/149‑1 (MQ=255)                                              atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                          <  1:388194‑M2/48‑1 (MQ=255)                                              atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGa                                                                                                          >  2:388194‑M2/94‑141 (MQ=255)                                               aTCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGtt                                                                                                 <  2:198077/149‑1 (MQ=255)                                                  gCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAt                                                                                               <  8:308657/148‑1 (MQ=255)                                                  ccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTAt                                                                                               <  7:281518‑M2/59‑1 (MQ=255)                                                    cAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt                                                                                            <  1:121368‑M2/149‑58 (MQ=255)                                                    cAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt                                                                                            >  5:200634‑M2/1‑92 (MQ=255)                                                         aCAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTATGCCTTTAGTGGCGGGGTCTTTGGCTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac                                                                                       >  3:288540‑M2/1‑87 (MQ=255)                                                              ccGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCG‑CCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAg                                                                                 <  1:63577/149‑1 (MQ=255)                                                                gacgacAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGGCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAgg                                                                                <  3:21661/149‑1 (MQ=255)                                                                 acgacAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat                                                                               <  7:72640‑M2/149‑71 (MQ=255)                                                                    tcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCTACCATAGGGGGTTCAAAGGAGAATGGCTTTGCTTGAGCAAGTGTTATGCCAGATTTTTAAGGgtat                                                                            >  5:29289‑M2/72‑149 (MQ=255)                                                                          agcagGATCAGCCTGAGTGTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc                                                                      <  4:165120/149‑1 (MQ=255)                                                                          aaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTc                                                                      >  1:370294‑M2/66‑149 (MQ=255)                                                                                ttaaatcatatctttacagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                                 <  4:132317‑M2/89‑1 (MQ=255)                                                                                aTCAGCTTGAGTTTGCCTTTAGTGGCGGGTTAGTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                                 <  8:234136/148‑1 (MQ=255)                                                                                      ttGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTg                                                          >  6:126787/1‑149 (MQ=255)                                                                                               acagaacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTg                                                  <  2:294987‑M2/104‑1 (MQ=255)                                                                                                cagaacgaatgtccaaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTgg                                                 <  3:372415‑M2/105‑1 (MQ=255)                                                                                                cTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGc                                                >  7:132108/1‑149 (MQ=255)                                                                                                   aacgaatgtcctaatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGcttc                                             >  7:105091‑M2/41‑149 (MQ=255)                                                                                                       ggCGTGGGCTTTGAGTGCATCGCTCTTCGCCATGCCAATATTGCTTCGTGCATCGTGGGTTCAAAGGAGAATGGCCTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGTTGGATTCCAGCAGGTTTTGCGGTGCTGGCttcttc                                          <  7:217642/148‑1 (MQ=255)                                                                                                        gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGTGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTcgc                                        <  3:244279/149‑1 (MQ=255)                                                                                                        gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAg                                                                                          >  6:191832/1‑99 (MQ=255)                                                                                                        gCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAg                                                                                          <  5:191832/99‑1 (MQ=255)                                                                                                          ggggTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCgg                                      <  1:202985/149‑1 (MQ=255)                                                                                                            ggTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCCTCCATCGGGGGTGCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGc                                    <  8:196733/149‑1 (MQ=255)                                                                                                             gTCTTTGACTGCGTCGCTCTTCGCACAGCCAATAAcgggtcatgccgagataatgcaaaacttaggacattccttctctaagctattgtatttaaacgagtagattagaacgcctgctcagcaatgcctgcttcgcgcccaatcgcatc                                   >  4:102211‑M2/1‑35 (MQ=255)                                                                                                              taatttttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCcagca                                                                 <  8:300881‑M2/89‑1 (MQ=255)                                                                                                              tCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTc                                  >  2:259405/1‑149 (MQ=255)                                                                                                                  tGACTGCTTCGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagcc                               >  8:72640‑M2/1‑30 (MQ=255)                                                                                                                   tttgccttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCATAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGccc                              <  1:52171‑M2/124‑1 (MQ=255)                                                                                                                    actactTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgc                            <  2:314573/149‑1 (MQ=255)                                                                                                                      tGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgcg                           >  1:61443/1‑148 (MQ=255)                                                                                                                        cTTCGCTCTTCGGCATTCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGGTTGAGCAAGTGTTATGCCAGATTTTGCAGTGGATGGATTCCAGCAGGTTTTGGGGTGCTGGCTTCTTCGCGGGCGAGCCCGCga                          <  5:54091/147‑1 (MQ=255)                                                                                                                         ttatctcggcataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGGTTGAGCAAGTGGTATGCCAGCTTTTGCCGGGGATGGATTCCAGCGGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCcgcgaggg                       >  4:152342‑M2/19‑146 (MQ=255)                                                                                                                           cGCTCTTCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagcttttgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattga                      >  2:181626‑M2/1‑21 (MQ=255)                                                                                                                           atctcgtcaaaaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCgaagaa                      <  6:29289‑M2/132‑1 (MQ=255)                                                                                                                                ttCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag                                                                                                      <  6:204581‑M2/63‑48 (MQ=255)                                                                                                                                ttCGCCATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag                                                                                                      >  5:204581‑M2/1‑16 (MQ=255)                                                                                                                                   ataaccccAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCa             >  4:271102‑M2/9‑149 (MQ=255)                                                                                                                                    ccATGCCAATAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggtttg            >  2:121368‑M2/1‑12 (MQ=255)                                                                                                                                           aataatCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACa     <  3:370762/149‑1 (MQ=255)                                                                                                                                           aataatCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACa     <  1:259405/149‑1 (MQ=255)                                                                                                                                               atCCGTCGTCCATAGTGGGTTCAAAGGAGAATGGCTTTGCTTGAGCAAGTGTTATGCCAGATTTTGAAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGTGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACTGtt  <  2:61443/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CTCGCTCTTGTGCATGATGAACCAGGTAGCGCCCACCGAAAGGCCGATCGCCAGCAACAGGCCGACGACAGCCAGCAGGATCAGCTTGAGTTTGCCTTTAGTGGCGGGGTCTTTGACTGCTTCGCTCTTCGCCATGCCAATAATCCGTCGTCCATCGGGGGTTCAAAGGAGAATGGCTTGGCTTGAGCAAGTGTTATGCCAGATTTTGCAGGGGATGGATTCCAGCAGGTTTTGCGGTGCTGGCTTCTTCGCGGGCTCGCCCGCGAAGAAGCCAGCCCAGGCCAACAGTT  >  NC_002947/4950716‑4951005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.