New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3544818	42 (0.660)	3 (0.050)	3/254	NT	7.3%	coding (617/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	= 3544850	36 (0.590)					coding (585/2607 nt)	PP_3130	hypothetical protein

CACGCTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGT  >  NC_002947/3544672‑3544965                                                                                                                                                    |                                                                                                                                                    cACGCTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGt                                                                                                                                                    >  1:123764/1‑148 (MQ=255) cACGCTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTc                                                                                                                                                   <  1:233592/149‑1 (MQ=255) cACGCTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTc                                                                                                                                                   <  2:96120/149‑1 (MQ=255)     cTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGt                                                                                                                                               <  7:148051/149‑1 (MQ=255)        gCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGTGTCTGCCAGGCCGAAGCGCTCGCTTGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTg                                                                                                                                             <  2:247201/148‑1 (MQ=255)                gTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGcc                                                                                                                                    <  6:7110/149‑1 (MQ=255)                   tttCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCtt                                                                                                                                  <  6:8424/148‑1 (MQ=255)                   tttCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCtt                                                                                                                                  <  6:73852/148‑1 (MQ=255)                    ttCCGCGGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGGCGCCGGTCACGTTGAGCACGGCCTTg                                                                                                                                 <  7:304152/148‑1 (MQ=255)                       cGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAg                                                                                                                               <  4:141282/147‑1 (MQ=255)                       cGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAg                                                                                                                               >  3:141282/1‑147 (MQ=255)                        gCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAgctg                                                                                                                            >  7:289080/1‑149 (MQ=255)                         cTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGtt                                                                                                                                              >  4:43306/1‑130 (MQ=255)                         cTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGtt                                                                                                                                              <  3:43306/130‑1 (MQ=255)                         cTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGGCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAgctgc                                                                                                                           <  8:70805/149‑1 (MQ=255)                            cGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAgctgct                                                                                                                          <  5:178700/147‑1 (MQ=255)                                  ggAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGGATGGCGGGGACTGCAAGGCCGACGCGCGCGCTGGGTGTCGGGCCGAGTTCGAGGTCGCCGGGCACGTTGCGCCCGGCCTTGAGATGCTGGCGGcc                                                                                                                   <  1:102418‑M2/149‑3 (MQ=255)                                  ggAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGccgccagcagctcaaggccgtgctcaacgtgaccg                                                                                                                  >  1:62918‑M1/1‑114 (MQ=255)                                      cGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGgcgc                                                                                                              >  8:253041/1‑149 (MQ=255)                                       gACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGccgccagcagctcaaggccgtgctcaacgtgaccggcgac                                                                                                             <  2:62918‑M1/149‑41 (MQ=255)                                       gACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCCGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCt                                                                                                             <  1:353031/149‑1 (MQ=255)                                          aGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGAt                                                                                                          <  1:179705/149‑1 (MQ=255)                                            gTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGccgccagcagctcaaggccgtgctcaacgtgaccggc                                                                                                                >  1:320903‑M1/1‑104 (MQ=255)                                             tCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCgg                                                                                                       <  6:362304/149‑1 (MQ=255)                                              ccACCGGCGAGGTGCGCCAGGCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCggg                                                                                                      <  7:297423/149‑1 (MQ=255)                                                    gCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTg                                                                                                <  6:304777/149‑1 (MQ=255)                                                         gTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTagag                                                                                           <  5:79220/149‑1 (MQ=255)                                                         gTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCACCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGTTGATCGGGTCCTTGTagag                                                                                           <  6:44732/149‑1 (MQ=255)                                                                     aGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAg                                                                               <  6:186026/149‑1 (MQ=255)                                                                     aGCTCGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCAAGCAg                                                                               >  7:120207/1‑149 (MQ=255)                                                                          gTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCg                                                                           >  7:9664/1‑148 (MQ=255)                                                                           tcatcaGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGa                                                                         <  5:211622/149‑1 (MQ=255)                                                                              tcaGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACgg                                                                      <  2:102418/149‑1 (MQ=255)                                                                                         tGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCgcgc                                                            <  2:123764/149‑1 (MQ=255)                                                                                               ggTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGaaa                                                      <  7:253041/149‑1 (MQ=255)                                                                                                     ccAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGa                                                  <  8:289080/147‑1 (MQ=255)                                                                                                      cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                 >  1:156907/1‑115 (MQ=255)                                                                                                      cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                 <  2:156907/115‑1 (MQ=255)                                                                                                      cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                 <  2:161605/115‑1 (MQ=255)                                                                                                      cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                 >  1:161605/1‑115 (MQ=255)                                                                                                                  ctcgctGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCg                                   <  1:363435/149‑1 (MQ=255)                                                                                                                         ggTGTCGGGCCGAGTTCGATGTAGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGa                             >  2:82153/1‑148 (MQ=255)                                                                                                                               gggCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCAt                      >  2:150026/1‑149 (MQ=255)                                                                                                                                  ccGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGAGCTTGGCCAGTGGCGGGTCGAAACGCATTTc                   <  8:9664/149‑1 (MQ=255)                                                                                                                                     aGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGAt                <  3:99838/149‑1 (MQ=255)                                                                                                                                       ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTc                               <  2:240788/132‑1 (MQ=255)                                                                                                                                       ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTc                               >  1:240788/1‑132 (MQ=255)                                                                                                                                       ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGc              >  3:44968/1‑149 (MQ=255)                                                                                                                                       ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGc              >  3:160433/1‑149 (MQ=255)                                                                                                                                             gTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggacctgtc        <  2:62918‑M2/149‑110 (MQ=255)                                                                                                                                                gCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggac             >  1:320903‑M2/1‑37 (MQ=255)                                                                                                                                                  cGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggacctgtcgttcc   >  1:62918‑M2/1‑35 (MQ=255)                                                                                                                                                   ggccgccagcatctcaaggccgggcgcaacgtgcccggcgacctcgaactcggcccgacacccagcgcgcgcgtcggccttgcagtccccgccatcctggcctgatgaccagctggactggcgcacctcgccggtggacctgtcgttcc  <  1:102418‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CACGCTTGCCGGCGGGTTTTTCCGCTGCGTTGAGGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGT  >  NC_002947/3544672‑3544965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.