New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3544818	42 (0.660)	3 (0.050)	3/254	NT	7.3%	coding (617/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	= 3544850	36 (0.590)					coding (585/2607 nt)	PP_3130	hypothetical protein

GGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGCCCCACGTCCAGCCGCGGTT  >  NC_002947/3544705‑3544993                                                                                                                                                   |                                                                                                                                                ggAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGGATGGCGGGGACTGCAAGGCCGACGCGCGCGCTGGGTGTCGGGCCGAGTTCGAGGTCGCCGGGCACGTTGCGCCCGGCCTTGAGATGCTGGCGGcc                                                                                                                                               <  1:102418‑M2/149‑3 (MQ=255)     cGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGgcgc                                                                                                                                          >  8:253041/1‑149 (MQ=255)      gACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCCGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCt                                                                                                                                         <  1:353031/149‑1 (MQ=255)         aGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGAt                                                                                                                                      <  1:179705/149‑1 (MQ=255)            tCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCgg                                                                                                                                   <  6:362304/149‑1 (MQ=255)             ccACCGGCGAGGTGCGCCAGGCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCggg                                                                                                                                  <  7:297423/149‑1 (MQ=255)                   gCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTg                                                                                                                            <  6:304777/149‑1 (MQ=255)                        gTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTagag                                                                                                                       <  5:79220/149‑1 (MQ=255)                        gTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCACCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGTTGATCGGGTCCTTGTagag                                                                                                                       <  6:44732/149‑1 (MQ=255)                                    aGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAg                                                                                                           <  6:186026/149‑1 (MQ=255)                                    aGCTCGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCAAGCAg                                                                                                           >  7:120207/1‑149 (MQ=255)                                         gTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCg                                                                                                       >  7:9664/1‑148 (MQ=255)                                          tcatcaGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGa                                                                                                     <  5:211622/149‑1 (MQ=255)                                             tcaGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACgg                                                                                                  <  2:102418/149‑1 (MQ=255)                                                        tGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCgcgc                                                                                        <  2:123764/149‑1 (MQ=255)                                                              ggTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGaaa                                                                                  <  7:253041/149‑1 (MQ=255)                                                                    ccAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGa                                                                              <  8:289080/147‑1 (MQ=255)                                                                     cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                                             <  2:156907/115‑1 (MQ=255)                                                                     cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                                             <  2:161605/115‑1 (MQ=255)                                                                     cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                                             >  1:161605/1‑115 (MQ=255)                                                                     cAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGc                                                                                                             >  1:156907/1‑115 (MQ=255)                                                                                 ctcgctGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCg                                                               <  1:363435/149‑1 (MQ=255)                                                                                        ggTGTCGGGCCGAGTTCGATGTAGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGa                                                         >  2:82153/1‑148 (MQ=255)                                                                                              gggCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCAt                                                  >  2:150026/1‑149 (MQ=255)                                                                                                 ccGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGAGCTTGGCCAGTGGCGGGTCGAAACGCATTTc                                               <  8:9664/149‑1 (MQ=255)                                                                                                    aGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGAt                                            <  3:99838/149‑1 (MQ=255)                                                                                                      ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTc                                                           >  1:240788/1‑132 (MQ=255)                                                                                                      ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTc                                                           <  2:240788/132‑1 (MQ=255)                                                                                                      ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGc                                          >  3:160433/1‑149 (MQ=255)                                                                                                      ttCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGc                                          >  3:44968/1‑149 (MQ=255)                                                                                                            gTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggacctgtc                                    <  2:62918‑M2/149‑110 (MQ=255)                                                                                                               gCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggac                                         >  1:320903‑M2/1‑37 (MQ=255)                                                                                                                 cGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGccggcgacatcgaactcggcccgacacccagcgagcgcttcggcctggcagaccccgccacctggcctgatgaccagctggactggcgcacctcgccggtggacctgtcgttcc                               >  1:62918‑M2/1‑35 (MQ=255)                                                                                                                      aCGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGc                          >  5:234994/1‑149 (MQ=255)                                                                                                                      aCGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGc                          <  4:160433/149‑1 (MQ=255)                                                                                                                          tGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTg                                                                         >  2:241326/1‑98 (MQ=255)                                                                                                                          tGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTg                                                                         <  1:241326/98‑1 (MQ=255)                                                                                                                            aGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGTGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGcc                    <  1:82153/149‑1 (MQ=255)                                                                                                                               aCGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGCCCCa                 >  6:322978/1‑149 (MQ=255)                                                                                                                                       gAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGCCCCACGTCCAGc         >  1:5837/1‑149 (MQ=255)                                                                                                                                        aGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGAt                                            >  6:269334/1‑113 (MQ=255)                                                                                                                                        aGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGAt                                            <  5:269334/113‑1 (MQ=255)                                                                                                                                              tgGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGCCCCACGTCCAGCCGCGGtt  <  4:195427/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GGAACGACAGGTCCACCGGCGAGGTGCGCCAGTCCAGCTGGTCATCAGGCCAGG‑TGGCGGGGTCTGCCAGGCCGAAGCGCTCGCTGGGTGTCGGGCCGAGTTCGATGTCGCCGGTCACGTTGAGCACGGCCTTGAGCTGCTGGCGGCCGGCGCTGATCGGGTCCTTGTAGAGGAATGCACGCAGCTCGGACGGGTTGCCGCGCTCGAAATAGACCTTGGCCAGTGGCGGGTCGAAACGCATTTCGATGCGTCGCCCCTGGTCAGCCTTGCCCCACGTCCAGCCGCGGTT  >  NC_002947/3544705‑3544993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.