New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400298	68 (1.070)	4 (0.060)	4/258	NT	7.6%	intergenic (+33/‑117)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 400367	31 (0.500)					intergenic (+102/‑48)	PP_0333/PP_0334	hypothetical protein/transposase

ACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCAT  >  NC_002947/400225‑400512                                                                                                                                                |                                                                                                                                                  aCCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATg                                                                                                                                              >  3:127494/1‑148 (MQ=255)    cGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCT‑GATCTGAAGCGTGTGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaa                                                                                                                                          <  5:311698/149‑1 (MQ=255)       cGAAGAAGTTCACTGCTCGCAAGCCAGGGGGCT‑GATCTGAAGCGTGCGCCATACAATGTTATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGc                                                                                                                                       <  6:278616/149‑1 (MQ=255)          agaagTTCACTGCTGGCAAGCCAGGGTGCTGGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                                                                                                      >  1:235770/1‑148 (MQ=255)               ttCACTGCTGGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTc                                                                                                                                >  8:277326/1‑148 (MQ=255)                      ctgGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca                                                                                                                          <  3:331433/147‑1 (MQ=255)                      ctgGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCAAGGTGGTGTTCGAAGAAGCCACCGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGATACACg                                                                                                                        >  7:144097/1‑149 (MQ=255)                       tgGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa                                                                                                                       >  5:246296/1‑149 (MQ=255)                         gCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGAtt                                                                                                                     >  7:89474/1‑149 (MQ=255)                         gCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGAt                                                                                                                      <  7:55861/148‑1 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAcca                                                                                                                                                <  3:182665‑M2/120‑4 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAcca                                                                                                                                                >  4:182665‑M2/1‑117 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGc                                                                                                                                       <  6:227168/129‑1 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGc                                                                                                                                       >  5:227168/1‑129 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc                                                                                                                   >  6:171565/1‑149 (MQ=255)                           aaGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc                                                                                                                   >  7:93970/1‑149 (MQ=255)                            aGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGACACACGATTccc                                                                                                                  >  5:234629/1‑149 (MQ=255)                             gCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                                                                                                 <  8:49946/149‑1 (MQ=255)                              ccAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTg                                                                                                                >  4:360913/1‑149 (MQ=255)                                aGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATAAAAAAGCATAGTTCGAAACACGATTCCCTGTc                                                                                                              <  2:65548/149‑1 (MQ=255)                                 gggTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCt                                                                                                             >  5:381693/1‑149 (MQ=255)                                      cT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc                                                                                                        <  8:89474/149‑1 (MQ=255)                                       t‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACt                                                                                                       >  1:83461/1‑149 (MQ=255)                                               aaGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGa                                                                                                     <  4:127494/144‑1 (MQ=255)                                               aaGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAt                                                                                                    <  5:4465/145‑1 (MQ=255)                                                    tGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCtt                                                                                           >  4:36391/1‑149 (MQ=39)                                                     gcgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                                                                                          <  6:246296/149‑1 (MQ=38)                                                      cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg                                                                                         <  2:24865/149‑1 (MQ=38)                                                      cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg                                                                                         <  2:174194/149‑1 (MQ=38)                                                       gcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa                                                                                                                                         <  6:70536/100‑1 (MQ=40)                                                       gcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa                                                                                                                                         >  5:70536/1‑100 (MQ=40)                                                       gcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc                                                                                        <  1:62595/149‑1 (MQ=37)                                                        ccATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGca                                                                                       <  6:304852/149‑1 (MQ=35)                                                          aTACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTgg                                                                                                >  8:333610/1‑138 (MQ=34)                                                              aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa                                                                                 >  2:186961/1‑149 (MQ=31)                                                                         tGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttga                                                                      <  2:223378‑M2/149‑78 (MQ=255)                                                                          ggACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgac                                                                     <  4:98952‑M2/149‑79 (MQ=255)                                                                                      gccgAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgaccgccgccttgaa                                                         >  3:98952‑M2/1‑59 (MQ=255)                                                                                                                        gaagCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgaccgccgccttgaactcgcgcagcgccttggaacccaccagcagcggg                       >  1:223378‑M2/1‑25 (MQ=255)                                                                                                                                             gaggccatcgtttacctttgatggcgcacgcttcagctcagccccctggcttgccagcagagaccttcttcgccggggtgaccgccgccttgaactcgcgcagcgccttggaacccaccagcagcgggtagttgaagttgctgcggtcc  >  7:273485‑M2/1‑4 (MQ=255)                                                                                                                                                |                                                                                                                                                  ACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCT‑GATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCAT  >  NC_002947/400225‑400512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.