New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1874006 = | 61 (0.960) | 3 (0.050) | 3/254 | NT | 5.4% | coding (317/1056 nt) | cobU | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
? | NC_002947 | 1874081 = | 47 (0.770) | coding (392/1056 nt) | cobU | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
ACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATCGGTGGCGAGATGGGCA > NC_002947/1873936‑1874218 | gcctgcaaggccgcttgcagctggttttcggtcatcgcaggttgacgggcaaagttggcagtaccggtgcCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCAc > 2:271627‑M1/71‑149 (MQ=255) ccGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCAcc < 3:115009/149‑1 (MQ=255) cGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCg > 4:305400/1‑149 (MQ=255) tACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAAc > 1:348783/1‑149 (MQ=255) cGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACtt > 5:219638/1‑149 (MQ=255) cGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACATGGGCACCATTGACGCGCAGCTGGAACTTCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAAc < 5:271160/147‑1 (MQ=255) cTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGccc < 1:374968/149‑1 (MQ=255) ttCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCg > 4:90662/1‑149 (MQ=255) ttCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCg > 5:41670/1‑149 (MQ=255) cgtcgGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCTCCGGTACTGCCAACTTTGCCCg < 2:345089/147‑1 (MQ=255) tcgGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCaa > 3:339543/1‑149 (MQ=255) cggcggGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAAc < 6:101302/149‑1 (MQ=255) gcggGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCt > 8:21447/1‑149 (MQ=255) ggtcatcgcaggttgacgggcaaagttggcagtaccggtgcCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTggg < 2:81749‑M1/76‑1 (MQ=255) ggtcatcgcaggttgacgggcaaagttggcagtaccggtgcCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTggg > 1:81749‑M1/42‑117 (MQ=255) gggggCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGc < 5:41621/149‑1 (MQ=255) gggCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGa < 2:178253/149‑1 (MQ=255) cggcgATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTg < 4:360119/141‑1 (MQ=255) cggcgATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTg > 3:360119/1‑141 (MQ=255) cggcgATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGAcc < 4:339543/149‑1 (MQ=255) gATCAGTGTGCAGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGaa > 8:259346/1‑148 (MQ=255) gtgtGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACAGAAAACCAg > 4:184474/1‑149 (MQ=255) cTGGCGCGGCAGCTGCAGGCCAGCCTGGCCGTGGTCGACCTGGGCACCATTGACGCGCAGATGGAACTGCCCGGCGTGAGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGc > 5:21715/1‑148 (MQ=255) gCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCt < 8:164628/149‑1 (MQ=255) gCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCt > 2:142161/1‑149 (MQ=255) gCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGc < 7:21447/149‑1 (MQ=255) gtgcccagccgcagatggcgcacgccgggcagttccagctgcgcgtcaatggtgcccaggtcgaccacgtccaggctggGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGc > 2:271627‑M2/80‑149 (MQ=255) cAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACAGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGc > 4:234770/1‑149 (MQ=255) ggCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTg < 3:305400/149‑1 (MQ=255) ggCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTg < 3:234770/149‑1 (MQ=255) ggCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTg < 4:236179/149‑1 (MQ=255) cccagccgcagatggcgcacgccgggcagttccagctgcgcgtcaatggtgcccaggtcgaccacgtccaggctggGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGAcc > 1:81749‑M2/77‑117 (MQ=255) cccagccgcagatggcgcacgccgggcagttccagctgcgcgtcaatggtgcccaggtcgaccacgtccaggctggGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGAcc < 2:81749‑M2/41‑1 (MQ=255) CAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTc > 6:253399‑M1/1‑149 (MQ=255) CAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTc < 6:144024‑M1/149‑1 (MQ=255) AGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTcg < 4:136772‑M1/149‑1 (MQ=255) GCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTcgc > 3:222992‑M1/1‑149 (MQ=255) CTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGa > 7:309572‑M1/1‑149 (MQ=255) CTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGa > 6:219638‑M1/1‑149 (MQ=255) ggACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGa > 6:217943/1‑147 (MQ=255) ggACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGa > 6:335734/1‑147 (MQ=255) gACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAg < 3:136772/149‑1 (MQ=255) gTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGcc > 2:181896/1‑147 (MQ=255) cGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAgc < 3:90662/149‑1 (MQ=255) cGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAgc < 4:155245/149‑1 (MQ=255) ggCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCt < 7:259346/147‑1 (MQ=255) cACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGcc > 8:368782/1‑136 (MQ=255) cACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGcc < 7:368782/136‑1 (MQ=255) gcAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGcac < 1:142161/149‑1 (MQ=255) ggAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGgcg > 7:136488/1‑140 (MQ=255) ggAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGgcg < 8:136488/140‑1 (MQ=255) gAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGtt > 4:329340/1‑149 (MQ=255) aaCTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTc < 5:144024/149‑1 (MQ=255) tGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGGCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAgcgcg > 7:106566/1‑120 (MQ=255) tGCCCGGCGTGCGCCATCTCCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAgcgcg < 8:106566/120‑1 (MQ=255) cccGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATc < 3:329340/147‑1 (MQ=255) ccGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTCCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATCGGt < 6:367267/149‑1 (MQ=255) cgcCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGaa > 3:274325/1‑117 (MQ=255) cgcCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGaa < 4:274325/117‑1 (MQ=255) cATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATCGGTGGCGAGATggg > 6:54399/1‑149 (MQ=255) tCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATCGGTGGCGAGATGGGCa > 4:152123/1‑149 (MQ=255) | ACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATTGACGCGCAGCTGGAACTGCCCGGCGTGCGCCATCTGCGGCTGGGCACCGGTACTGCCAACTTTGCCCGTCAACCTGCGATGACCGAAAACCAGCTGCAAGCGGCCTTGCAGGCTGGTCGCGACAGTGCCCAGCGCGCTGCCGAACAGGGCGCACAGCTGTTCATCGGTGGCGAGATGGGCA > NC_002947/1873936‑1874218 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |