New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4270835 =	61 (0.960)	3 (0.050)	3/254	NT	5.8%	coding (975/1896 nt)	mrdA‑I	transpeptidase
	?	NC_002947	4270923 =	40 (0.660)					coding (1063/1896 nt)	mrdA‑I	transpeptidase

GCTGCGCGACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGACCGGCTGC  >  NC_002947/4270778‑4271067                                                                                                                                                  |                                                                                                                                                 gcTGCGCGACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGctact                                                                                                                                               <  2:221069/149‑1 (MQ=255)    gcgcGACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCAGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCtactac                                                                                                                                             >  6:103277/1‑148 (MQ=255)     cgcgACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCtactac                                                                                                                                             <  4:147243/147‑1 (MQ=255)     cgcgACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCtactac                                                                                                                                             <  3:33957/147‑1 (MQ=255)                        gaCTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACcac                                                                                                                        <  2:329072/148‑1 (MQ=255)                        cACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACcac                                                                                                                        <  5:229327/149‑1 (MQ=255)                         aCTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCAGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACcac                                                                                                                        >  3:46086/1‑148 (MQ=255)                                aaCCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTAcc                                                                                                                 <  3:350993/148‑1 (MQ=255)                                   cGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCaa                                                                                                             >  8:148180/1‑149 (MQ=255)                                     tgtgCTGCGGGGGCTGTATGCGCCCGGCTCGACCGTGAAGCCTGTAGTGGCCAGCGCTGGCCTCGAGAGCGGGGTGATGACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAAGTGCCCAACTATGACCACAAGTACCGCAACt                                                                                                           <  8:192685/149‑1 (MQ=255)                                        ccTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTAC‑ACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGaa                                                                                                       >  3:170429/1‑149 (MQ=255)                                         cTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGaa                                                                                                       <  1:232231/149‑1 (MQ=255)                                         cTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGaa                                                                                                       >  7:2385/1‑149 (MQ=255)                                         cTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGaa                                                                                                       <  7:313406/149‑1 (MQ=255)                                          tGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAAc                                                                                                      >  6:205566/1‑149 (MQ=255)                                                            ccgggtcgaacacccggctgccaggggtgatcaccccgctgtcgaggccagcgatggccacttcaggcttcacggtcgagccgggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGAGACGGCTgg                                                                                    >  5:40255‑M2/87‑149 (MQ=255)                                                              GGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAgcggc                                                                                             <  1:270928‑M1/138‑1 (MQ=255)                                                              GGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAgcggc                                                                                             >  2:270928‑M1/1‑138 (MQ=255)                                                                   gaacacccggctgccaggggtgatcaccccgctgtcgaggccagcgatggccacttcaggcttcacggtcgagccgggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTTGAACCGCAGCGGCGACGGCTGGGTg                                                                                 <  6:16056‑M2/66‑1 (MQ=255)                                                                   gaacacccggctgccaggggtgatcaccccgctgtcgaggccagcgatggccacttcaggcttcacggtcgagccgggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTg                                                                                 >  5:16056‑M2/80‑145 (MQ=255)                                                                   gACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGTTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACATGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACa                                                                             <  4:46086/149‑1 (MQ=255)                                                                   gACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGa                                                                               <  5:103277/147‑1 (MQ=255)                                                                      cGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGt                                                                          <  4:154917/149‑1 (MQ=255)                                                                      cGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGt                                                                          <  7:55592/149‑1 (MQ=255)                                                                         gAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTaca                                                                       >  6:6032/1‑149 (MQ=255)                                                                            gCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGTACATGTCCAccc                                                                    <  8:322295/149‑2 (MQ=255)                                                                               tGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCca                                                                 >  6:183874/1‑149 (MQ=255)                                                                               tGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCca                                                                 >  3:193515/1‑149 (MQ=255)                                                                                   gTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCcatcat                                                             <  5:205566/149‑1 (MQ=255)                                                                                        cATCGCTGGTCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCGACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTCGGTGGACATGTACACCGCCATCATGCGtt                                                        >  3:147754/1‑149 (MQ=255)                                                                                        cATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGtt                                                        >  1:380575/1‑149 (MQ=255)                                                                                             cTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGTCATGTACACCGCCATCATGCGTTCCAAc                                                   <  7:148180/149‑1 (MQ=255)                                                                                                       cAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCACCGCCACCTACt                                         >  6:180988/1‑149 (MQ=255)                                                                                                            gggTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGacac                                              <  5:66145/139‑1 (MQ=255)                                                                                                            gggTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGacac                                              >  6:66145/1‑139 (MQ=255)                                                                                                             ggTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTAc                                    >  3:87563/1‑148 (MQ=255)                                                                                                                  tCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCt                               <  5:6032/148‑1 (MQ=255)                                                                                                                  tCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTGCTACGACCTg                              >  8:170606/1‑149 (MQ=255)                                                                                                                    aCCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGgc                            >  6:341262/1‑149 (MQ=255)                                                                                                                      cccTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGgcg                           >  1:335940/1‑148 (MQ=255)                                                                                                                        cTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGca                         >  7:170378/1‑148 (MQ=255)                                                                                                                         tGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGACCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGcac                        >  7:86104/1‑148 (MQ=255)                                                                                                                           gCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACaa                      <  8:2385/148‑1 (MQ=255)                                                                                                                               ccGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTgg                 >  3:253762/1‑149 (MQ=255)                                                                                                                               ccGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTgg                 <  4:87563/149‑1 (MQ=255)                                                                                                                                 gggTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTACAACGACACCTACTTCTACGACCTGGCGCACAAGTTggg                >  2:173600/1‑148 (MQ=255)                                                                                                                                         gACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGAcc        <  4:193515/148‑1 (MQ=255)                                                                                                                                           cccGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAAc                                                   <  8:67144/103‑1 (MQ=255)                                                                                                                                           cccGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAAc                                                   >  7:67144/1‑103 (MQ=255)                                                                                                                                            ccgggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGACCGGCt    <  8:170378‑M2/143‑1 (MQ=255)                                                                                                                                            ccgggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGACCGGCt    <  6:330984‑M2/143‑1 (MQ=255)                                                                                                                                              gggcTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGACCGGCTGc  <  2:335940‑M2/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GCTGCGCGACTCCATCGACCGCCCACTGTTCAACCGTGTCCTGCGCGGCCTGTATGCGCCCGGCTCGACCGTGAAGCCTGAAGTGGCCATCGCTGGCCTCGACAGCGGGGTGATCACCCCTGGCAGCCGGGTGTTCGACCCGGGCTACTACGAACTGCCCAACTATGACCACAAGTACCGCAACTGGAACCGCAGCGGCGACGGCTGGGTGGACATGTACACCGCCATCATGCGTTCCAACGACACCTACTTCTACGACCTGGCGCACAAGTTGGGCATCGACCGGCTGC  >  NC_002947/4270778‑4271067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.