New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4586034 =	24 (0.380)	6 (0.110)	6/222	NT	33.3%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	4 (0.080)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

TCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTT  >  NC_002947/4585960‑4586251                                                                                                                                                     |                                                                                                                                                   catgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccc                                                                                                                                                    <  1:240989‑M2/1‑1 (MQ=255) catgcgtgagatcagtgtggcggagattgcggctgcatctgcgggttgatgtgctggcgcggccggcctcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccc                                                                                                                                                    <  7:252937‑M2/1‑1 (MQ=255)   ctttGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGGATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACC‑GTGCCGGCCTTGAATGCGGTGCTGCCCCTGGTAGGAGCGGGTTTACCcg                                                                                                                                                   <  6:120921/145‑1 (MQ=37)      gggagatcagtgtggcggagattgcggctgcatctgcggggtgaggggctggcgcggccggcctcttcgcgggtaaacccgctcctaccaggggcagcgccgcattcacggccggcacggtccctggtaggagcgggtttaccCGCGaa                                                                                                                                               <  7:15817‑M2/6‑1 (MQ=255)                                                                      ttcgcgGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCGTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCCCCTCACCCCGCAGATGCAGCCGCAATCTCCGCCACACTgatctccc                                                                              <  7:15817‑M1/143‑3 (MQ=255)                                                                           gGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATg                                                                         <  7:252937‑M1/148‑1 (MQ=255)                                                                           gGGTAAACCCGCTCCTACCAGGGA‑CCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATg                                                                         <  1:240989‑M1/148‑1 (MQ=255)                                                                                          ctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCAc                                                           >  4:65175‑M2/60‑149 (MQ=255)                                                                                            accaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                                                         >  5:377349‑M2/58‑149 (MQ=255)                                                                                              caggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAg                                                                                                               <  6:211500‑M2/38‑1 (MQ=255)                                                                                              caggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAg                                                                                                               >  5:211500‑M2/56‑93 (MQ=255)                                                                                                ggacc‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcg                                                    <  8:252937/145‑1 (MQ=255)                                                                                                              ttcaaggccggcacggtccctggtaggagcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCg                                       <  6:377349‑M2/110‑1 (MQ=255)                                                                                                                  aaTGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGa                                                                                                              >  6:4837/1‑74 (MQ=255)                                                                                                                  aaTGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGa                                                                                                              <  5:4837/74‑1 (MQ=255)                                                                                                                        gcgcTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACtcgtc                             <  2:240989/149‑1 (MQ=255)                                                                                                                                          gcgggtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCAACGGGTACTCGTCGACAAAACGTATATACcg           >  7:280560‑M2/12‑149 (MQ=255)                                                                                                                                              gtttaccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCCCGCATGCGGCACTTCTGCACCTTGCCGGTCACGGTCAGCGGGTAGTCGTCGAGATAACGTAGATACggcggc       >  4:217946‑M2/8‑149 (MQ=255)                                                                                                                                                   ccCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCtt  <  6:358757‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑C‑GTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAACGTATATACCGCGGCACCTT  >  NC_002947/4585960‑4586251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.