New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5870261 =	24 (0.380)	4 (0.080)	3/208	NT	19.6%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	14 (0.280)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator

TTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC  >  NC_002947/5870212‑5870502                                                                                                                                                 |                                                                                                                                                     tttGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCAGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGcaca                                                                                                                                                 >  4:80833/1‑148 (MQ=255)    gggggAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAAAGGCCTGGGTCCAA‑CCCCAGATGTTTGTACGTGGAAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACaaa                                                                                                                                               >  6:277752/1‑147 (MQ=255)              gAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAAAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTGAACCGCGAATAGGCCGGCCCAAAACGCAtacccc                                                                                                                                    >  3:100503/1‑143 (MQ=37)                 ttgtggGTCTTCGTATTTGAGGTTGTCGGTTCGGCCCTCTTCGCGGGTGACCCCGGTCCTCCAACGGCCTGGGTCCAA‑CCCCCTTGGGGGGTAGGGGGTCGGCGG‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTcac                                                                                                                                <  6:79416/149‑1 (MQ=255)                         cTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCCCAACGACAACGGCCAGGGGGCAACCCCCAGA‑GTGTGGACGGGGGAGGGGCGGGGTGCCCCGGCGAA‑AGGCCGGCCCCAACAGCAAGACCCCCCCACGGgttt                                                                                                                        >  4:267782/1‑149 (MQ=255)                                   gATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTGCAA‑CCCCAGCTGTGTGTTCGTGGTAGGAGC‑GGGTTGACCCGCGAAGAGGCCGGCACAAACAGCATACCCCTCCCAGGGTTTTATTAGccccc                                                                                                              >  1:95768/1‑148 (MQ=38)                                         gtCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGccc                                                                                                         >  1:50691/1‑148 (MQ=255)                                             gTTCGGGCCTCTTCGCGGGTTAAACCCCGGCTACAAAGGCCAGGGGGCAA‑ACCCAGATGTGTTTTACTGGGTGGAGC‑GGGTTGACCCCCGGAGAGGCCGGCCCAAACAGCATCACCCAGACAGGGGTTTATTTGCCCCACGCCCacac                                                                                                     >  4:32319/1‑145 (MQ=255)                                                      TCTTCGCGGGTGAACCCGCTACTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCCCCCGCGAAGAGGCCGGCACAAACAGCATCCCCCTCACAGGGGTTTATTAGCCCCAGGCCCAATCCTCCGCGcc                                                                                            <  4:313911‑M1/148‑1 (MQ=255)                                                          CGCGGGTCAACCCGCTCATACAACGGCCGGGGCCCAC‑CCCCAGATGTTTGTACGTGGTAGCAGG‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCaa                                                                                          >  7:211874‑M1/1‑146 (MQ=255)                                                                    CCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                              <  1:20418‑M1/148‑1 (MQ=255)                                                                       ccgctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt                                                                              >  8:29443‑M2/75‑147 (MQ=255)                                                                       ccgctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCa                                                                            >  7:187703‑M2/75‑149 (MQ=255)                                                                       GCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                          <  4:170568‑M1/149‑1 (MQ=255)                                                                        cgctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAg                                                                           >  8:108938‑M2/74‑149 (MQ=255)                                                                        CTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAggg                                                                         <  7:320691‑M1/149‑1 (MQ=255)                                                                         gctcctaccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAgg                                                                          >  7:149839‑M2/73‑149 (MQ=255)                                                                            TACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAg                                                                     <  2:282320‑M1/149‑1 (MQ=255)                                                                             ACAACGGCCAGGCTCCAA‑CCCCAGAAGAGTGTACCTGGTAGGAGC‑GCCATCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACACGGTTTTATTAGCCCCAGCCCCAATCATACGCGCCAACCCAAGGttcatcagcccaagt                                                                    <  7:152751‑M1/149‑8 (MQ=255)                                                                                         gTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCtg                                                        >  2:218779/1‑149 (MQ=255)                                                                                                  ccAGATGTGTTTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAc                                                <  1:92763/149‑1 (MQ=255)                                                                                                  ccAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAc                                                >  6:100148/1‑149 (MQ=255)                                                                                                   cAGTTGGGTGTACGTGGTCGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAcc                                               <  3:80833/149‑1 (MQ=255)                                                                                                        gtgtgtACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGtt                                                                                 >  6:42337/1‑110 (MQ=255)                                                                                                         tgggtACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCgg                                          <  2:50691/145‑1 (MQ=255)                                                                                                                  ggTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATgg                                >  5:36347/1‑149 (MQ=255)                                                                                                                    gtaggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGc                               >  5:395480‑M2/30‑149 (MQ=255)                                                                                                                     taggagcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGTCCCAATCATCCGCGCCAACCCAAGGTTCTTCACGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCt                              >  6:21721‑M2/29‑149 (MQ=255)                                                                                                                       ttcgcgggtgaacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCa                                   <  8:129788‑M2/116‑1 (MQ=255)                                                                                                                       ttcgcgggtgaacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCa                                   >  7:129788‑M2/27‑142 (MQ=255)                                                                                                                          gcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGa                                                    >  7:30197‑M2/24‑122 (MQ=255)                                                                                                                          gcgggttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGa                                                    <  8:30197‑M2/99‑1 (MQ=255)                                                                                                                              gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                     >  1:370689‑M2/20‑149 (MQ=255)                                                                                                                              gttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTc                     >  8:91601‑M2/20‑149 (MQ=255)                                                                                                                               ttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCg                    <  3:170568‑M2/131‑1 (MQ=255)                                                                                                                               ttcacccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCg                    >  2:199088‑M2/19‑149 (MQ=255)                                                                                                                                   cccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCca                <  2:20418‑M2/135‑1 (MQ=255)                                                                                                                                    ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcag               >  3:177258‑M2/14‑149 (MQ=255)                                                                                                                                    ccgcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcag               >  6:70593‑M2/14‑149 (MQ=255)                                                                                                                                      gcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcagca             <  4:100503‑M2/138‑1 (MQ=255)                                                                                                                                      gcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcag               >  4:112448‑M2/12‑147 (MQ=255)                                                                                                                                      gcgaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTA‑TAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCcagcag            >  4:266171‑M2/12‑149 (MQ=255)                                                                                                                                        gaagaggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGt           >  5:308355‑M2/10‑149 (MQ=255)                                                                                                                                             ggccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCtt      <  3:313911‑M2/145‑1 (MQ=255)                                                                                                                                              gccGGCACAAAGAGCATCACCCTCACATTGTTTTTTTAGCCGCAGGAGCAATCATCGTCGGCATCCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  8:152751‑M2/146‑1 (MQ=255)                                                                                                                                              gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGGAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     >  5:370333‑M2/4‑149 (MQ=255)                                                                                                                                              gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGTGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  8:187703‑M2/146‑1 (MQ=255)                                                                                                                                              gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     >  6:251225‑M2/4‑149 (MQ=255)                                                                                                                                              gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  8:149839‑M2/146‑1 (MQ=255)                                                                                                                                              gccGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTg     <  8:320691‑M2/146‑1 (MQ=255)                                                                                                                                              gCCGGCTCAAAGAGAATCACCCTCACATGGTTTTATTAGCCGCAGGCCCAATCATCCGGGCCCACCCACGGTTCTTCATGGCCTGTTGCAGCGAGGTGTGGATAACCTGCGGGTTGTGATGGCTCAAGGCCTCGTCCAGCATTTCCtt      <  3:11900/148‑1 (MQ=255)                                                                                                                                               ccGGCACAAACAGCATCACCCTCCCAGGGTATTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTgg    >  1:33955‑M2/3‑149 (MQ=255)                                                                                                                                                 ggCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGGTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGcc  <  5:277752/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGC‑GGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGGCTCAAGGCCTCGGCCAGCAGTTCCTTGGCC  >  NC_002947/5870212‑5870502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.