| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 0 (0.000) | 31 (0.890) +GGC |
29/284 | 0.3 | 100% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 0 (0.000) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > NC_002947/4980439‑4980723 | tcgcgaaCACAGGTAGCGGCCGGTGAACAGGTTTTGCCATTTATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGg < 6:167442‑M1/145‑2 (MQ=255) gCCGACCACAGGTAGCGGCCGGTGACACGGGGTTGCCATTTATAGAACGGGGCGGGGCCCGGGGGGGCCGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGgg < 1:5102‑M1/148‑3 (MQ=255) gAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTgg > 5:167442/1‑143 (MQ=255) cGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACACGCAAGGGGAACAAGGCCAGTAAAGACAGACGATTCATTAGAGTGAACCTTCACATTCTTGGggccgcgttgcggccccaatt > 5:18412‑M1/1‑127 (MQ=255) gTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaatta > 8:4145‑M1/1‑125 (MQ=255) cAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaaca > 8:56715‑M1/1‑120 (MQ=255) gCTTTGCCATTGATAGAACGGGGCGGGGGCAGCCGTGGCAGGCAGAACCAGAACCACCAAGGGGAACAAGGACAGTAACGACAGCCGCTTCATTAGCCTGAAAATTCACATTCTTGGggccacatagcggcaccaaatacaaacacc > 4:135628‑M1/1‑117 (MQ=255) tttGCCATTTATATAACGGGGTGGGGGCATCGGTGTCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCTCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaa < 6:18412‑M1/148‑34 (MQ=255) tttGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacacc > 8:10754‑M1/1‑115 (MQ=255) aTTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaat > 6:107004‑M1/1‑109 (MQ=255) ttGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaata < 2:56897‑M1/148‑41 (MQ=255) aCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatc < 7:56715‑M1/148‑49 (MQ=255) ggggcggggGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCGGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcag < 8:156324‑M1/148‑51 (MQ=255) cgggggcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgcgttgcggccccaattacaaacacccaagcccatacaatcatcagggca > 1:162517‑M1/1‑94 (MQ=255) gggcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatct < 5:137234‑M1/148‑58 (MQ=255) gggcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaatta > 5:115962‑M1/1‑91 (MQ=255) ggcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattac < 6:115962‑M1/113‑24 (MQ=255) gcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctga < 5:107004‑M1/148‑60 (MQ=255) cagggggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACATCCGCTTCATTCGCGTGAACCTTCTCATTCTGGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcagggcatctgaa < 6:186320‑M1/148‑61 (MQ=255) gcaccagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgc > 1:132944‑M1/1‑67 (MQ=255) ccagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgcttt < 1:165915‑M1/148‑85 (MQ=255) cagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctt > 5:59809‑M1/1‑63 (MQ=255) gcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcctcaggtcatctgaatgattctctgcatgatggtgctttcag > 8:44212‑M1/1‑61 (MQ=255) gcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcag > 5:188574‑M1/1‑61 (MQ=255) ggggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggcccctttgcggccccaattacaaaccccaaacccaatacaatcaacaggtcatatgaatgatgttatgcatcatggtgctttacgtgg > 4:74286‑M1/1‑57 (MQ=255) ggCCAGTAACGACAGCCGCATCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaaatacaaacaccaaagccaaaacaatcatcaggtcatctgaatgaaggtctgcatgatggtgctttcagtggaaatggtctt > 4:41320‑M1/1‑48 (MQ=255) cGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtag < 3:90261‑M1/148‑117 (MQ=255) tCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttg > 4:191407‑M1/1‑28 (MQ=255) cgTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgc < 5:6205‑M1/148‑128 (MQ=255) tGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgcct < 3:135628‑M1/148‑130 (MQ=255) cTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttga > 2:130161‑M1/1‑14 (MQ=255) tCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcag > 8:145903‑M1/1‑12 (MQ=255) ttgtaattggggccgcaaagcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcatggtagttgctctgcgacttgatcaggt > 6:133231‑M1/7‑10 (MQ=255) acaTTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcag < 7:4145‑M1/146‑137 (MQ=255) | GGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA > NC_002947/4980439‑4980723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |