Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_002947 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE hypothetical protein/flagellar hook protein FlgE

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 49805850 (0.000)31 (0.890)
+GGC
29/284 0.3 100% intergenic (‑24/+44) PP_4387/flgE hypothetical protein/flagellar hook protein FlgE
?NC_002947 4980586 = 0 (0.000)intergenic (‑25/+43) PP_4387/flgE hypothetical protein/flagellar hook protein FlgE

GGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTC  >  NC_002947/4980456‑4980730
                                                                                                                                  |                                                                                                                                                
cggtgaccaggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcacacgcaaggggaacaaggccagtaaagacagacgattcattagagtgaaccttcacattcttggggcCGCGTTGCGGCCCCAAtt                                                                                                                                 >  5:18412‑M2/131‑148 (MQ=255)
  gtgaccaggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTa                                                                                                                                >  8:4145‑M2/129‑147 (MQ=255)
       caggctttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAaca                                                                                                                          >  8:56715‑M2/124‑148 (MQ=255)
          gctttgccattgatagaacggggcgggggcagccgtggcaggcagaaccagaaccaccaaggggaacaaggacagtaacgacagccgcttcattagcctgaaaattcacattcttggggcCACATAGCGGCACCAAATACAAACAcc                                                                                                                        >  4:135628‑M2/121‑147 (MQ=255)
            tttgccatttatataacggggtgggggcatcggtgtcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattctcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCaaa                                                                                                                     <  6:18412‑M2/30‑1 (MQ=255)
            tttgccattgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACAcc                                                                                                                        >  8:10754‑M2/119‑145 (MQ=255)
                  attgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAAt                                                                                                               >  6:107004‑M2/113‑148 (MQ=255)
                   ttgatagaacggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATa                                                                                                              <  2:56897‑M2/37‑1 (MQ=255)
                           acggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAatcatc                                                                                                      <  7:56715‑M2/45‑1 (MQ=255)
                             ggggcgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagcggcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAg                                                                                                    <  8:156324‑M2/47‑1 (MQ=255)
                                 cgggggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCGTTGCGGCCCCAATTACAAACACCCAAGCCCATACAATCATCAGGGCa                                                                                                >  1:162517‑M2/98‑148 (MQ=255)
                                    gggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTa                                                                                                                                >  5:115962‑M2/95‑113 (MQ=255)
                                    gggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCt                                                                                             <  5:137234‑M2/54‑1 (MQ=255)
                                     ggcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTAc                                                                                                                               <  6:115962‑M2/20‑1 (MQ=255)
                                      gcagcgggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGa                                                                                           <  5:107004‑M2/56‑1 (MQ=255)
                                       cagggggggcaggcagaaccagcaccagcaaggggaacaaggccagtaacgacatccgcttcattcgcgtgaaccttctcattctgggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGGCATCTGaa                                                                                          <  6:186320‑M2/57‑1 (MQ=255)
                                                            gcaccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGc                                                                     >  1:132944‑M2/71‑148 (MQ=255)
                                                               ccagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCttt                                                                  <  1:165915‑M2/81‑1 (MQ=255)
                                                                cagcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCtt                                                                   >  5:59809‑M2/67‑146 (MQ=255)
                                                                  gcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCCTCAGGTCATCTGAATGATTCTCTGCATGATGGTGCTTTCAg                                                               >  8:44212‑M2/65‑148 (MQ=255)
                                                                  gcaaggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAg                                                               >  5:188574‑M2/65‑148 (MQ=255)
                                                                      ggggaacaaggccagtaacgacagccgcttcattcgcgtgaaccttcacattcttggggcCCCTTTGCGGCCCCAATTACAAACCCCAAACCCAATACAATCAACAGGTCATATGAATGATGTTATGCATCATGGTGCTTTACGTgg                                                            >  4:74286‑M2/61‑147 (MQ=255)
                                                                               ggccagtaacgacagccgcatcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAAATACAAACACCAAAGCCAAAACAATCATCAGGTCATCTGAATGAAGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCtt                                                  >  4:41320‑M2/52‑148 (MQ=255)
                                                                                               cgcttcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAg                                  <  3:90261‑M2/113‑1 (MQ=255)
                                                                                                   tcattcgcgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTg                               >  4:191407‑M2/32‑147 (MQ=255)
                                                                                                          cgtgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTgcgc                       <  5:6205‑M2/124‑1 (MQ=255)
                                                                                                            tgaaccttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCt                     <  3:135628‑M2/126‑1 (MQ=255)
                                                                                                                 cttcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGa                  >  2:130161‑M2/18‑146 (MQ=255)
                                                                                                                   tcacattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAg              >  8:145903‑M2/16‑148 (MQ=255)
                                                                                                                     ttgtaattggggcCGCAAAGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCATGGTAGTTGCTCTGCGACTTGATCAGGt            >  6:133231‑M2/14‑148 (MQ=255)
                                                                                                                     acattcttggggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAg              <  7:4145‑M2/133‑1 (MQ=255)
                                                                                                                               ggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCCGCAGGTCAGCTGAATGATGGGCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCACTGGCCTGGTAGTTGCTCTGCGCCGTGATCAGGTGTACCagcgc  <  2:112798‑M2/145‑3 (MQ=255)
                                                                                                                               ggcCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTc  <  8:25470‑M2/145‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                                
GGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGCGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCTC  >  NC_002947/4980456‑4980730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.