New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1114894	46 (0.830)	8 (0.180)	6/226	5.9	17.8%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114920	36 (0.790)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTC  >  NC_002947/1114751‑1115038                                                                                                                                                 |                                                                                                                                                     tCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACaggagg                                                                                                                                                    >  3:272986/1‑146 (MQ=255) tCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACaggagg                                                                                                                                                    <  4:272986/146‑1 (MQ=255) tCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTg                                                                                                                                                 <  6:314670/149‑1 (MQ=255)  cGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAcggcgc                                                                                                                                                >  2:191763/1‑146 (MQ=255)      gCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc‑gc                                                                                                                                            <  3:347861/148‑1 (MQ=255)      gCGACCCTGGTGGAGGTTGCGC‑GGTGCAGGGTGGGTTTGTTCGGGGTCATGGAAGTGT‑CCAGCCCTATACGAGCGGTGGATTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGAGACACAAGTCCGCTCCCACAGGAGGGTGGC‑GCCt                                                                                                                                          >  5:50047/1‑149 (MQ=255)           ccTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACagga                                                                                                                                                      <  5:295209/134‑1 (MQ=255)           ccTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACagga                                                                                                                                                      >  6:295209/1‑134 (MQ=255)               gtggCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAgg                                                                                                                                    <  6:1875/147‑1 (MQ=255)                tggCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTg                                                                                                                                 >  1:228325/1‑149 (MQ=255)                         cgcgGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTc                                                                                                                         <  2:119535/148‑1 (MQ=255)                          gcgGGTACAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCt                                                                                                                       >  2:21005/1‑149 (MQ=255)                               tGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAGGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTggg                                                                                                                  <  3:59629/149‑1 (MQ=255)                                gCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                                                   >  6:172406/1‑147 (MQ=255)                                  aGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGc                                                                                                               <  1:191763/149‑1 (MQ=18)                                  aGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCACTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGc                                                                                                               >  3:350796/1‑149 (MQ=255)                                   gggtgggtTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                                                              <  1:170628/149‑1 (MQ=255)                                   gggtgggtTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                                                              <  5:195662/149‑1 (MQ=255)                                    ggtgggtTTGTTCGGGGTCATGGCAGTGTCCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc‑gc                                                                                                                                            >  1:217828/1‑119 (MQ=255)                                    ggtgggtTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc‑gc                                                                                                                                            <  2:217828/118‑1 (MQ=255)                                        ggtTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCtt                                                                                                         >  5:156689/1‑149 (MQ=255)                                              ttCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTgtgttg                                                                                                   <  1:21005/149‑3 (MQ=255)                                                cGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGCGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgc                                                                                                  <  1:305321/148‑1 (MQ=255)                                                 ggggTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgcg                                                                                                 >  5:185023/1‑148 (MQ=255)                                                    gTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                                                    >  4:229311/1‑142 (MQ=255)                                                    gTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                                                    <  3:229311/142‑1 (MQ=255)                                                        tGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGcc                                                                                         <  2:228325/149‑1 (MQ=255)                                                         ggCTGTGT‑CTAGCCCTTTACGAGGGGTGGGTTGAAGACCCTGGGGCTGCTGCGCAGCCTTTTTGCTACACATGGCCTCTCCAAGAGTTGGGTGGG‑GCGTTGAAGGTTGGCGCGGTCCTGTGGGAGGGGCCTTGTGTCGCGAAAGGGcc                                                                                         <  4:350796/148‑1 (MQ=255)                                                         ggCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtgt                                                                                                       >  1:221291/1‑134 (MQ=255)                                                         ggCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtgt                                                                                                       <  2:221291/134‑1 (MQ=255)                                                         ggCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCg                                                                                        >  2:26854/1‑149 (MQ=255)                                                         ggCAGTGT‑CCAGCCCTATACGAGCGCTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGCAGGGTGGC‑GCCTTGAAGGTTGGCGCCCTCCTGTGGGAGCGGCCTAGTGTCGCGAAAGGGcc                                                                                         >  7:240011/1‑148 (MQ=255)                                                                   cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGc                                                                            <  5:267153/149‑1 (MQ=255)                                                                    aGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGcc                                                                           >  5:22502/1‑149 (MQ=255)                                                                        cTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGt                                                                                       <  7:91859/136‑1 (MQ=255)                                                                                  ggTGTCTTGAAGACCCTGTGGCTGCTGCGCAGCCGTTTTGCGAAACAAGGCCGCTCCCACAGGTGGGTGGC‑GCCTTGATTGTGGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTctctct                                                             <  6:156689/149‑1 (MQ=38)                                                                                   gTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTa                                                            <  5:172406/149‑1 (MQ=255)                                                                                                ccTGGGGCTGCTGCTCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAgcgc                                               >  7:259408/1‑149 (MQ=255)                                                                                                                  cccTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAtgctg                             <  6:185023/149‑1 (MQ=255)                                                                                                                     tttcGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTc                          >  6:349287/1‑149 (MQ=255)                                                                                                                       ttGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                         <  5:165117/148‑1 (MQ=255)                                                                                                                       tggCGACACACGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTGGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                         <  7:319124/146‑1 (MQ=255)                                                                                                                               caAGGCCGCGCCCACAGGAGGGGGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTg                <  7:357330/149‑1 (MQ=255)                                                                                                                                    ccGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAg           >  2:336110/1‑149 (MQ=255)                                                                                                                                        tCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGCCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGcc       >  3:178582/1‑149 (MQ=255)                                                                                                                                         cccACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCt      >  3:275178/1‑149 (MQ=255)                                                                                                                                            acaGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATTCTGCTCGGTGAAGTTGGCCAGGGCCTGtt   <  1:26854/149‑1 (MQ=255)                                                                                                                                            acaGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGtt   >  4:4152/1‑149 (MQ=255)                                                                                                                                             caGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTTAGACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGAGAAGTTGGCCAGGGCCTg     >  1:110762/1‑149 (MQ=255)                                                                                                                                             caGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc  >  3:247803/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGT‑CCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTC  >  NC_002947/1114751‑1115038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.