| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 296348 = | 50 (1.180) | 3 (0.080) | 3/244 | NT | 5.8% | coding (79/633 nt) | PP_0242 | TetR family transcriptional regulator |
| ? | NC_002947 | 296399 = | 50 (1.250) | coding (28/633 nt) | PP_0242 | TetR family transcriptional regulator | |||||
GAGCAAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/296500‑296348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgtgGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTTGCTCCAGCTCGGACTGCCTGGCGAGCGACTCGCGGGCCAGCGTCTCGAA > NC_002947/296399‑296545 GAGCAAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACGAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCG > 1:192740/1‑149 GCAAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAAGCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCG > 1:84908/1‑149 CAAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGT < 2:111667/149‑1 AAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTG < 3:88517/149‑1 AAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACGCCGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTG < 1:195537/149‑1 GCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTGGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTT > 2:140164/1‑149 CACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTGGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTT > 1:167537/1‑149 CACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTGGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTT < 2:167537/149‑1 GCGTGGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTTGCTCCAGCTCGGACTGCCTGGCGAGCGACTCGCGGGCCAGCGTCTC > 4:100625/1‑149 TGGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTTGCTCCAGCTCGGACTGCCTGGCGAGCGACTCGCGGGCCAGCGTCTCGAA < 7:246229/149‑1 GAGCAAAACGAAGTCGGTGACTTCGACCTGTTCGTCGGCGCCTACCAGGCCAGCATCCTGGCAATCAGCAGTTGATGAACCGCACCACCACCCCGCGCAAACCACG‑CGCCAGCAGCCAGGCCAGGATCGAGGCGATCCTGGCGGCTGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/296500‑296348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgtgGTTTGCGCGGGGTGGTGGTGCGGTTCATCAACTGCTGATTGCCAGGATGCTGGCCTGGTAGGCGCCGACGAACAGGTCGAAGTCACCGACTTCGTTTTGCTCCAGCTCGGACTGCCTGGCGAGCGACTCGCGGGCCAGCGTCTCGAA > NC_002947/296399‑296545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |