New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	401809 =	48 (1.140)	4 (0.110) +ACATAATGGGGTGTCAG	4/224	NT	8.9%	intergenic (+336/+93)	PP_0334/PP_0335	transposase/glutathione S‑transferase family protein
	?	NC_002947	5786515 =	46 (1.090)					intergenic (+58/‑73)	PP_5068/trxC	hypothetical protein/thioredoxin

GTCGCTACAGCGCCAGTGGCCTGAGGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTGGGAGCGGGCGTGCCCGCGAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/401925‑401809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAG  >  NC_002947/5786515‑5786558                                                                                                                      |||||||||||||||||                                             GTCGCTACAGCGCCAGTGGCCTGAGGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCG                               >  8:78268/1‑149                              CCTTCGCGGGTAAACCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTAGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACTCCCGCTCCCAAAAG  <  7:78268/149‑1                                            CCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTGGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCC       >  7:109769/1‑130                                            CCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTGGGAGCGGGCTTGCCCGCGAACACACATAATGGGGTGTCAGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCC       <  8:109769/130‑1                                                                                                                      |||||||||||||||||                                             GTCGCTACAGCGCCAGTGGCCTGAGGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGTTTTCCACAGTGTTCGCTATCTGTGGTGGGCTTTTGGGAGCGGGCGTGCCCGCGAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/401925‑401809 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAG  >  NC_002947/5786515‑5786558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.