New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 497023	60 (1.420)	6 (0.150)	6/242	NT	9.0%	coding (895/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	= 497096	65 (1.640)					coding (968/2388 nt)	PP_0409	two‑component system sensor histidine kinase

AGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/496868‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgccTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAGC  <  NC_002947/497096‑496949                                                                                                                                                                                                                                                                                                                  AGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGG                                                                                                                                                             <  5:183266/149‑1      GTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACAGGGCCTGGTTGTTCGGTCTCTTGCTGTTGTGTGCCTTGGCCACGCGGGTGTGGCAACG                                                                                                                                                        >  4:166405/1‑149       TGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGC                                                                                                                                                       >  2:258764/1‑149                          GCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGC                                                                                                                                    >  2:111788/1‑149                                                                  CTGAGCGAGTCGCCGGGCTTCTGGCAGATCATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTC                                                                                              >  1:150954/1‑147                                                                             GCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGC                                                                                 >  7:131114/1‑149                                                                                         GCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGC                                                                     <  2:150954/149‑1                                                                                          CAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCC                                                                    <  8:131114/149‑1                                                                                                     CTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTG                                                         <  1:111788/149‑1                                                                                                                                                            CTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAGC  >  7:20993/1‑149                                                                                                                                                                                                                                                                                                                  AGGCCGTGCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/496868‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgccTCTTCGCGCACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAAGC  <  NC_002947/497096‑496949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.