New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 670326 =45 (1.070)4 (0.100) 4/246 NT 7.9% coding (1768/2355 nt) pbpC peptidoglycan glycosyltransferase
?NC_002947 670367 = 50 (1.240)coding (1809/2355 nt) pbpC peptidoglycan glycosyltransferase

TTGCTCATCGGCTGACCCAGCGGCCAACAGATCGCTGCAACGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/670372‑670326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGGGCTTGCGGG  >  NC_002947/670367‑670509
                                                                                                                                                                                                
TTGCTCATCGGCTGACCCAGCGGCCAACAGATCGCTGCAACGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGG                                           >  4:183446/1‑149
   CTCATCGGCTGACCCAGCGGCCAACAGATCGCTGCAACGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTT                                        <  3:183446/149‑1
    TCATCGGCTGACCCAGCGGCCAACAGATCGCTGCAACGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTG                                       >  2:212529/1‑149
                                 GCTGCAACGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCACCGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGG           <  1:212529/149‑1
                                         GCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGGGCTTGCGGG  <  2:188635/149‑1
                                         GCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGGGCTTGCGGG  <  6:59588/149‑1
                                          CCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGGCATGGACCATGCACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGGGCTTGCGGG  >  1:52308/1‑149
                                                                                                                                                                                                
TTGCTCATCGGCTGACCCAGCGGCCAACAGATCGCTGCAACGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/670372‑670326
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGGGTTTGCGCGAACAAGTATGGGTCAACGAGCGGGGCTTGCGGG  >  NC_002947/670367‑670509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.