New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 670326 = | 45 (1.070) | 4 (0.100) | 4/246 | NT | 7.9% | coding (1768/2355 nt) | pbpC | peptidoglycan glycosyltransferase |
? | NC_002947 | 670367 = | 50 (1.240) | coding (1809/2355 nt) | pbpC | peptidoglycan glycosyltransferase |
ATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGG > NC_002947/670178‑670467 | aTGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAata > 3:178528/1‑149 (MQ=255) gATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCg < 2:155329/149‑1 (MQ=255) cccgcaagccccgctcgttgacccatacttgttcgcgcaaacccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtgcatggtccatgccaaagcgctgacgccgacagttggtgtcctgcttgctcATCgg > 1:52308‑M1/145‑149 (MQ=255) aTTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATc > 8:134940/1‑147 (MQ=255) aTTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATc < 7:134940/147‑1 (MQ=255) aTTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCAGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCgg > 1:188635/1‑149 (MQ=255) ttGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGAAGCGCCGGTACCTGCGAATATCGGc < 4:188897/149‑1 (MQ=255) cccgcaagccccgctcgttgacccatacttgttcgcgcaaacccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGc < 6:59588‑M1/6‑1 (MQ=255) cccgcaagccccgctcgttgacccatacttgttcgcgcaaacccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGc < 2:188635‑M1/6‑1 (MQ=255) gccgccCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAatat < 1:103465/142‑1 (MQ=255) gccgccCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAatat > 2:103465/1‑142 (MQ=255) cccgctcgttgacccatacttgttcgcgcaaacccaggcccagcggctggtcggctgcggtgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGCGTTGCAGc < 1:212529‑M1/14‑1 (MQ=255) cGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCg > 5:150531/1‑149 (MQ=255) ggTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGc < 4:178528/149‑1 (MQ=255) gCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTgg < 8:102099/149‑1 (MQ=255) caaacccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGa > 2:212529‑M1/107‑149 (MQ=255) aaacccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGag < 3:183446‑M1/44‑1 (MQ=255) cccaggcccagcggctggtcggctgcctgcaaggttggcggcgtggtgccgtccagggtccatgcaaagcgctgacgccgacagttggtgtcctgcttgctcATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGagcaa > 4:183446‑M1/103‑149 (MQ=255) tGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGagcaag > 8:142488/1‑149 (MQ=255) tGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGt > 7:132837/1‑149 (MQ=255) tGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGt > 7:539/1‑149 (MQ=255) ttGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCa < 7:142488/149‑1 (MQ=255) aGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCACGCTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGAAGAGCAAGCAGGACACCAACTGTCGGCGTCAtcgc > 5:151417/1‑149 (MQ=255) gTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCa < 6:34291/143‑1 (MQ=255) gTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCa > 5:34291/1‑143 (MQ=255) gTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCtt > 4:244554/1‑149 (MQ=255) gTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCtt > 7:225670/1‑149 (MQ=255) gATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATg > 4:38039/1‑149 (MQ=255) gTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGAccc > 2:82002/1‑149 (MQ=255) ttGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGAt < 6:82075/101‑1 (MQ=255) ttGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGAt > 5:82075/1‑101 (MQ=255) ttGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGCGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCt > 7:211265/1‑149 (MQ=255) ttGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGa < 2:25676/145‑1 (MQ=255) gAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGagcaagc > 4:159176/1‑107 (MQ=255) gAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGagcaagc < 3:159176/107‑1 (MQ=255) gAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGagcaagc > 2:92415/1‑107 (MQ=255) gCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGAc < 3:38039/149‑1 (MQ=255) aTCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGc < 8:132837/149‑1 (MQ=255) aGCCAGCGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCGGGGATCTGTTGGCCGCGGGGTCAGCCGTTGAGCAAGCAGGGCAGCCCCGGTCGGGGTCGGGGCGGTGGGGGGGCCCTGGGCGGGACCAggcg > 2:173470/1‑148 (MQ=255) aCGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCaa > 7:201496/1‑149 (MQ=255) gCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTg < 8:201496/149‑1 (MQ=255) aTCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgca < 3:244554/149‑1 (MQ=255) aTCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgca < 1:82002/149‑1 (MQ=255) aTCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTg > 1:61555/1‑147 (MQ=255) cAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgcagg > 8:72723/1‑149 (MQ=255) aGCGTCCCGGTAGCGCCGGTAGCTGCGAATATCGGCGTTGGATCGATGTGTTTGCCGTTGGGTCAGCCGACGAGCTAGCAGTACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgcaggc < 6:151417/149‑1 (MQ=255) aGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCt < 7:111542/119‑1 (MQ=255) aGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCt > 8:111542/1‑119 (MQ=255) aGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgcaggc < 7:72723/149‑1 (MQ=255) cGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgca < 2:20380/139‑1 (MQ=255) cGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTgca > 1:20380/1‑139 (MQ=255) cGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGAc > 3:29874/1‑149 (MQ=255) cGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGAc < 8:539/149‑1 (MQ=255) gTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCa < 6:150531/149‑1 (MQ=255) gTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCTGGCAGCCGACCAGCCGCTggg > 8:139368/1‑149 (MQ=255) cTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCaa > 7:177626/1‑67 (MQ=255) cTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCaa < 8:177626/67‑1 (MQ=255) cTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTg > 5:81635/1‑149 (MQ=255) cTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTg > 1:136416/1‑149 (MQ=255) cGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTgg < 8:225670/147‑1 (MQ=255) | ATGGATTGGCCGCCCCGACGGTACACCGGTGCCTGGGCAGTTCGGCCTGGCGTCGGCGGCGCCGCTGATGTTGCAGGTGCACGATCTGTTGAGCAATCGCGACAGCCAACGCGGCATCAGCGTCCCGGTAGCGCCGGTACCTGCGAATATCGGCGTTGCAGCGATCTGTTGGCCGCTGGGTCAGCCGATGAGCAAGCAGGACACCAACTGTCGGCGTCAGCGCTTTGCATGGACCCTGGACGGCACCACGCCGCCAACCTTGCAGGCAGCCGACCAGCCGCTGGGCCTGG > NC_002947/670178‑670467 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |