New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 95457949 (1.160)3 (0.070) 3/246 NT 6.6% coding (421/888 nt) cyoE protoheme IX farnesyltransferase
?NC_002947 = 954637 38 (0.940)coding (479/888 nt) cyoE protoheme IX farnesyltransferase

CACCCTGCTCGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/954428‑954579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGTGCCGTGCACCGATTTACGCTTCAGCCACAGGCTGTAGAAACCGACGTAGACGACAAAGCCAATCAGTGCG  <  NC_002947/954637‑954494
                                                                                                                                                                                                                                                                                                        
CACCCTGCTCGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCA                                                                                                                                                     <  3:173944/149‑1
  CCCTGCTCGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGC                                                                                                                                                   >  1:211978/1‑149
   aCTGCTCGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCC                                                                                                                                                  >  7:172689/2‑149
         CGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCA                                                                                                                                                     >  1:113425/1‑140
         CGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCA                                                                                                                                                     <  2:113425/140‑1
                                                                          TTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGAC                                                                                         <  7:161547/135‑1
                                                                          TTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGAC                                                                                         >  8:161547/1‑135
                                                                             GCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGT                                                                        <  6:181005/149‑1
                                                                                                                                                      CCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGTGCCGTGCACCGATTTACGCTTCAGCCACAGGCTGTAGAAACCGACGTAGACGACAAAGCCAATCAGTGCG  >  5:28022/1‑146
                                                                                                                                                      CCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGTGCCGTGCACCGATTTACGCTTCAGCCACAGGCTGTAGAAACCGACGTAGACGACAAAGCCA           >  5:92061/1‑137
                                                                                                                                                      CCAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGTGCCGTGCACCGATTTACGCTTCAGCCACAGGCTGTAGAAACCGACGTAGACGACAAAGCCA           <  6:92061/137‑1
                                                                                                                                                                                                                                                                                                        
CACCCTGCTCGGGGTGGCGGGTTTCAGCCTGCTGTATGTCCAGGCCAACCCGCTGTCTGCGTTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/954428‑954579
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccAGGTCGAAGCTGTTGCTCACGGCGCAGTAGCCGATCACCGGAGGCATGGCACCCGACAGGCTGCCGACCAAGGTGCCGTGCACCGATTTACGCTTCAGCCACAGGCTGTAGAAACCGACGTAGACGACAAAGCCAATCAGTGCG  <  NC_002947/954637‑954494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.