New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 954579	49 (1.160)	3 (0.070)	3/246	NT	6.6%	coding (421/888 nt)	cyoE	protoheme IX farnesyltransferase
	?	NC_002947	= 954637	38 (0.940)					coding (479/888 nt)	cyoE	protoheme IX farnesyltransferase

TTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTGGCACGTGGCATCCTCGCGGCGAAGAAGCAGA  >  NC_002947/954489‑954783                                                                                                                                                     |                                                                                                                                                   ttCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCt                                                                                                                                                    <  8:19676/149‑1 (MQ=255)      cgcACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTgg                                                                                                                                                  >  5:28022‑M2/1‑144 (MQ=255)               tGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTgg                                                                                                                                                  >  5:92061‑M2/1‑135 (MQ=255)               tGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTgg                                                                                                                                                  <  6:92061‑M2/137‑3 (MQ=255)                  cTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCctgc                                                                                                                                   <  5:183689/149‑1 (MQ=255)                  cTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCctgc                                                                                                                                   >  1:28770/1‑149 (MQ=255)                                tCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGc                                                                                                                     <  2:28770/149‑1 (MQ=255)                                    tttCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCttt                                                                                                                 <  2:252819/149‑1 (MQ=255)                                      tCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTg                                                                                                                <  3:239891/148‑1 (MQ=255)                                         aCAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCa                                                                                                             >  1:61085/1‑148 (MQ=255)                                          cAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGc                                                                                                              <  7:172261/146‑1 (MQ=255)                                          cAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCaaa                                                                                                           >  8:7829/1‑149 (MQ=255)                                           aGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAAt                                                                                                          <  8:1784/149‑1 (MQ=255)                                              cTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGcc                                                                                                       >  1:265044/1‑149 (MQ=255)                                                 tgGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGca                                                                                                    >  8:64243/1‑149 (MQ=255)                                                   gCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGcaca                                                                                                  <  7:64243/149‑1 (MQ=255)                                                   gCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGca                                                                                                    >  2:257336/1‑147 (MQ=255)                                                       aaGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGc                                                                                                              <  3:56271/133‑1 (MQ=255)                                                       aaGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGc                                                                                                              >  4:56271/1‑133 (MQ=255)                                                        aGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCttt                                                                                             <  1:257336/149‑1 (MQ=255)                                                           gTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGcc                                                                                          <  6:89521/149‑1 (MQ=255)                                                               aTCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATcg                                                                                      <  4:132103/149‑1 (MQ=255)                                                                       aCGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTTGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTc                                                                              >  1:147020/1‑149 (MQ=255)                                                                       aCGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTc                                                                              >  1:142812/1‑149 (MQ=255)                                                                           cACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCt                                                                          >  4:90559/1‑149 (MQ=255)                                                                            aCCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTggctgccgaccaaggtgccgtgcaccgatttacgcttcagccacaggctgtagaaaccgacgtagacgacaaagc                                                                         <  6:181005‑M2/149‑76 (MQ=255)                                                                              cTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCa                                                                       <  6:163641/149‑1 (MQ=255)                                                                                   tCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGAt                                                                  >  7:214166/1‑149 (MQ=255)                                                                                    cGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGAt                                                                  >  3:96159/1‑148 (MQ=255)                                                                                     ggCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTa                                                                <  7:7829/149‑1 (MQ=255)                                                                                          ccTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGGGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAgcg                                                           <  6:111906/149‑1 (MQ=255)                                                                                            tGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCt                                                         >  3:264411/1‑149 (MQ=255)                                                                                            tGTCGGGTGCCATGCCTCCGGAGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCCGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCt                                                         >  5:187413/1‑149 (MQ=255)                                                                                             gTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTggctgccgaccaaggtgccgtgcaccgatttacgcttcagccacaggctgtagaaaccgacgtagacgacaaagccaa                                                                      <  7:161547‑M2/135‑79 (MQ=255)                                                                                             gTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTggctgccgaccaaggtgccgtgcaccgatttacgcttcagccacaggctgtagaaaccgacgtagacgacaaagccaa                                                                      >  8:161547‑M2/1‑57 (MQ=255)                                                                                                                gTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGcc                                     >  3:5910/1‑149 (MQ=255)                                                                                                                   aTCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGt                                  <  8:219109/149‑1 (MQ=255)                                                                                                                    tCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGt                                  <  2:265044/148‑1 (MQ=255)                                                                                                                      ggCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTgg                                <  8:214166/148‑1 (MQ=255)                                                                                                                           cTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTGGCACGTg                          <  4:96159/149‑1 (MQ=255)                                                                                                                                        aaCAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAg                                                             >  7:251266/1‑101 (MQ=255)                                                                                                                                        aaCAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAg                                                             <  8:251266/101‑1 (MQ=255)                                                                                                                                         aCAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTg                                                        >  7:251693/1‑105 (MQ=255)                                                                                                                                         aCAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTg                                                        <  8:251693/105‑1 (MQ=255)                                                                                                                                             cTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTGGCACGTGGCATCCTCGCGGCgaag         >  6:17013/1‑148 (MQ=255)                                                                                                                                                   ccTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGAGATCTTCCGCTTCAAGGATTACAGCGCTGCCTAGATTCCGGTCCTGCCTGTGGCACGTGGCATCCTGGCGGCGAAGATGCAGa  <  6:187413/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTCTGCGCACTGATTGGCTTTGTCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGCACGGCACCTTGGTCGGCAGCCTGTCGGGTGCCATGCCTCCGGTGATCGGCTACTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGGTAACCCTGCTGGTGATGTTCAGCCTTTGGCAAATGCCGCACAGCTTTGCCATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTGGCACGTGGCATCCTCGCGGCGAAGAAGCAGA  >  NC_002947/954489‑954783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.