New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1203805 =	52 (1.230)	3 (0.070)	3/246	NT	5.5%	coding (148/645 nt)	gspN	type II secretion pathway protein GspN
	?	NC_002947	1203850 =	53 (1.320)					coding (193/645 nt)	gspN	type II secretion pathway protein GspN

CCACTTGCGCATTAGCCTGCAAGCGCCAGGGCTGCAGCGTCCAGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1203853‑1203805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaaGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCTGGAGGCATCAGCCAAGGGGGCTTTGGCGACGGTCTCGACGGATTACCGCCTGGCCGGCCAGTGGCAGGGTGTGTTGAGGATGCAG  >  NC_002947/1203850‑1203996                                                                                                                                                                                                      CCACTTGCGCATTAGCCTGCAAGCGCCAGGGCTGCAGCGTCCAGCGCAAGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCTGGAGGCATCAGCCAAGGGGGCTTTGGCGACGGTCTCGc                                                 >  2:206956/1‑148    CTTGCGCATTAGCCTGCAAGCGCCAGGGCTGCAGCGTCCAGCGCAAGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCT                                                                                       <  7:3502/108‑1    CTTGCGCATTAGCCTGCAAGCGCCAGGGCTGCAGCGTCCAGCGCAAGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCT                                                                                       >  8:3502/1‑108                                             CGCAAGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCTGGAGGCATCAGCCAAGGGGGCTTTGGCGACGGTCTCGACGGATTACCGCCTGGCCGGCCAGTGGCAGGGTGTGTTGAGGATG     <  6:262557/149‑1                                                AAGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCTGGAGGCATCAGCCAAGGGGGCTTTGGCGACGGTCTCGACGGATTACCGCCTGGCCGGCCAGTGGCAGGGTGTGTTGAGGATGCAG  >  5:233413/1‑149                                                                                                                                                                                                      CCACTTGCGCATTAGCCTGCAAGCGCCAGGGCTGCAGCGTCCAGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1203853‑1203805 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaaGTGGGGTTCCAGGGCCAGGCCTGGCAGTTGCGTGCAGAAGGCTGGCCTTGGCATTGGCGGCTGGAGGCATCAGCCAAGGGGGCTTTGGCGACGGTCTCGACGGATTACCGCCTGGCCGGCCAGTGGCAGGGTGTGTTGAGGATGCAG  >  NC_002947/1203850‑1203996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.