| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1377534 | 42 (0.990) | 4 (0.100) | 4/246 | NT | 8.5% | coding (99/1293 nt) | PP_1201 | hypothetical protein |
| ? | NC_002947 | = 1377544 | 46 (1.140) | coding (89/1293 nt) | PP_1201 | hypothetical protein | |||||
TTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1377387‑1377534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcc‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGACCTGAGC < NC_002947/1377544‑1377399 TTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGC < 3:6863/143‑1TTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGC > 4:6863/1‑143 TCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCAC < 5:272709/137‑1 TCAACTGTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCAC > 6:272709/1‑137 GTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGCCTGGAACAGTCGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTG > 1:196915/1‑85 GTTCCAGGCGCGCCTCGGGGGCCG‑GGCGCGCCTGGAACAGTCGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTG < 2:196915/85‑1 CGCGCC‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGACCT > 5:28925/1‑148 GCC‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGAGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGACCTGAGC > 1:89115/1‑149 C‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGAC > 3:113526/1‑141 C‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGAC < 4:113526/141‑1 C‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGG < 1:154477/87‑1 C‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGG > 2:154477/1‑87 TTCACCGGCCTGGCTCAGGTCGAGCAGTTGCTTGCCCGTCAGTGCCTGGTCTTGTGGCACGCCGATGGCCACCCGGGCCTTGGGGTGCACGCCAGGGGTAACACGGGTGATGCTGGTGTCATTGATGCTCAACTGTTCCAGGCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1377387‑1377534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcc‑CGGCCCCCGAGGCGCGCCTGGAACAGTTGAGCATCAATGACACCAGCATCACCCGTGTTACCCCTGGCGTGCACCCCAAGGCCCGGGTGGCCATCGGCGTGCCACAAGACCAGGCACTGACGGGCAAGCAACTGCTCGACCTGAGC < NC_002947/1377544‑1377399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |