New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1843419	45 (1.070)	3 (0.070)	3/246	NT	6.1%	coding (1375/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1843446	49 (1.220)					coding (1348/2754 nt)	gacS	sensor protein GacS

TGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843272‑1843419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAG  <  NC_002947/1843446‑1843304                                                                                                                                                                                                                                                                                                     TGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG                                                                                                                                                 >  7:8255/1‑148     CCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACC                                                                                                                                            >  7:250556/1‑149                                 CTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGGTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCC                                                                                                                <  8:250556/149‑1                                         ACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAG                                                                                                                                                      <  7:71572/103‑1                                         ACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAG                                                                                                                                                      >  8:71572/1‑103                                                                               AAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTC                                                                                                             >  3:3031/1‑106                                                                               AAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTC                                                                                                             <  4:3031/106‑1                                                                                                                                               GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAG  <  7:71441/149‑1                                                                                                                                               GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACA   <  3:84484/148‑1                                                                                                                                                                                                                                                                                                     TGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843272‑1843419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAG  <  NC_002947/1843446‑1843304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.