New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1844589	41 (0.970)	4 (0.100)	4/250	NT	9.8%	coding (205/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1844670	34 (0.830)					coding (124/2754 nt)	gacS	sensor protein GacS

GCGCTGCAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1844440‑1844589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCTGGCCGCACCCGCCATGGCCCGGCTCGCGCCTGCGCAACTGGAG  <  NC_002947/1844670‑1844584                                                                                                                                                                                                                                               GCGCTGCAGGAGTTGGGTGCCGGTACCGACGCTGGGCGGCAGATTGAGCATGCTAGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTC                                                                                            >  4:250921/1‑147                                                GCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCTGG                                           >  1:207873/1‑149                                                                                   TCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCAGGCCGCACCCGCCATGGCCCGGCTCGCGCCTGCGCAA        >  7:232803/1‑149                                                                                       GGGCCAGAAACGCCACTGCGCTCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCTGGCCGCACCCGCCATGGCCCGGCTCGCGCCTGCGCAACTGG    <  2:207873/149‑1                                                                                         GCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCAGGCCGCACCCGCCATGGCCCGGCTCGCGCCTGCGCAACTGGAG  <  8:232803/149‑1                                                                                                                                                                                                                                               GCGCTGCAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1844440‑1844589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagCTGCTGCAGCGCGGCAAGATGATCGCCGAACAACTGGCGCCCCTGGCCGCACCCGCCATGGCCCGGCTCGCGCCTGCGCAACTGGAG  <  NC_002947/1844670‑1844584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.