New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1844589	41 (0.970)	4 (0.100)	4/250	NT	9.8%	coding (205/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1844670	34 (0.830)					coding (124/2754 nt)	gacS	sensor protein GacS

CAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGCACCAGGGCCATCAAG  >  NC_002947/1844446‑1844734                                                                                                                                                |                                                                                                                                                  cAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTg                                                                                                                                                <  7:48896/147‑1 (MQ=255)    gAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAg                                                                                                                                           >  3:232644/1‑149 (MQ=255)      gTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGgc                                                                                                                                         >  4:241482/1‑149 (MQ=255)       ttGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGgcg                                                                                                                                        <  4:232644/149‑1 (MQ=255)               cGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCgg                                                                                                                                >  7:21613/1‑149 (MQ=255)                      gccgcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATgg                                                                                                                         >  6:131341/1‑149 (MQ=255)                      gccgcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCACGCGCGTGTGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCCGGAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATgg                                                                                                                         >  6:30156/1‑149 (MQ=255)                       ccgcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATgg                                                                                                                         >  3:165138/1‑148 (MQ=255)                       ccgcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGc                                                                                                                        >  1:28875/1‑149 (MQ=255)                        cgcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCg                                                                                                                       <  4:208269/149‑1 (MQ=255)                         gcTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCgg                                                                                                                      <  5:129122/149‑1 (MQ=255)                             ggcggcAGATTGCGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGc                                                                                                                  <  7:248976/149‑1 (MQ=255)                              gcggcAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCg                                                                                                                 <  2:131801/149‑1 (MQ=255)                                ggcAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGc                                                                                                               <  1:247519/149‑1 (MQ=255)                                        gAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCa                                                                                                                            >  3:4044/1‑128 (MQ=255)                                        gAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCa                                                                                                                            <  4:4044/128‑1 (MQ=255)                                        gAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCAGGTGCGGCCAGGGgc                                                                                                        <  4:165138/148‑1 (MQ=255)                                         aGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTGCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGgcgc                                                                                                      <  4:65397/149‑1 (MQ=255)                                         aGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGgcgc                                                                                                      >  6:247060/1‑149 (MQ=255)                                         aGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGgcg                                                                                                       <  4:10197/148‑1 (MQ=255)                                          gCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGctgctgcagcgcggcaagatgatcgccgaacaactggcgcccctgg                                                                                                     >  1:207873‑M1/1‑103 (MQ=255)                                               cTCGGGCCGGCGTGGGCCAGGCGCGTGTGGTCCGGGGCCAGAATCGCCACTGCGCGCACATCGGCCTGGTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCGATGGCGGGTGCGGCCAGGGGCGCCAgtt                                                                                                 <  5:30156/148‑1 (MQ=255)                                               cTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAgtt                                                                                                 <  5:247060/148‑1 (MQ=255)                                                tCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAgttgt                                                                                               >  2:51191/1‑149 (MQ=255)                                                  gggCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTc                                                                                             <  5:151533/149‑1 (MQ=255)                                                   ggCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCg                                                                                            <  8:21613/149‑1 (MQ=255)                                                    gCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAAGTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTc                                                                                             >  6:151533/1‑147 (MQ=255)                                                               ccAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTg                                                                                >  5:261659/1‑149 (MQ=255)                                                                   gcgcGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCcgc                                                                            >  3:160320/1‑149 (MQ=255)                                                                            gTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTgcag                                                                     >  5:125712/1‑147 (MQ=255)                                                                             tCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGctgctgcagcgcggcaagatgatcgccgaacaactggcgccccaggccgcacccgccatggcccggctcgcgcctgcgcaa                                                                  >  7:232803‑M1/1‑68 (MQ=255)                                                                                 gggCCAGAAACGCCACTGCGCTCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGctgctgcagcgcggcaagatgatcgccgaacaactggcgcccctggccgcacccgccatggcccggctcgcgcctgcgcaactgg                                                              <  2:207873‑M1/149‑86 (MQ=255)                                                                                   gCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGctgctgcagcgcggcaagatgatcgccgaacaactggcgccccaggccgcacccgccatggcccggctcgcgcctgcgcaactggag                                                            <  8:232803‑M1/149‑88 (MQ=255)                                                                                   gCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCGAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGt                                                            >  5:233430/1‑149 (MQ=255)                                                                                   gCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGt                                                            <  6:233430/149‑1 (MQ=255)                                                                                          aCGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCCATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAgg                                                     <  5:131341/149‑1 (MQ=255)                                                                                            gCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTc                                                   >  1:259565/1‑149 (MQ=255)                                                                                              cACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGt                                                 >  5:251945/1‑149 (MQ=255)                                                                                               aCTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGtt                                                <  2:259565/149‑1 (MQ=255)                                                                                                    gcgcACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGtt                                           >  1:78312/1‑149 (MQ=255)                                                                                                       cacaTCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCa                                        <  4:160320/149‑1 (MQ=255)                                                                                                              gCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGt                                 <  3:250921/149‑1 (MQ=255)                                                                                                                    tCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGaaa                             >  3:239075/1‑147 (MQ=255)                                                                                                                    tCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGaaa                             >  3:59016/1‑147 (MQ=255)                                                                                                                                    cAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGc                 >  5:196793/1‑143 (MQ=255)                                                                                                                                    cAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGc                 <  6:196793/143‑1 (MQ=255)                                                                                                                                           ctcCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCTGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGctggagagaattgccgcacaaaccctggagcaggccgatgtgcgcgcagtggcgtttctggc    <  8:232803‑M2/149‑63 (MQ=255)                                                                                                                                             ccAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGctggagagaattgccgcacaaaccctggagcaggccgatgtgagcgcagtggcgtttctggccc  <  2:207873‑M2/149‑65 (MQ=255)                                                                                                                                              cAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGGCAGGGGCGCCAGTTGTTCGGCGATCATCTTTCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGCTCCAGGGCCATCaat  <  4:9483/148‑2 (MQ=255)                                                                                                                                              cAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGCACCAGGGCCATCaa   <  6:261659/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  CAGGAGTTGGGTGCCGGTACCGCCGCTGGGCGGCAGATTGAGCATGCTCGGGCCGGCGTGGGCCAGGCGCGTGCGGTCCGGGGCCAGAAACGCCACTGCGCGCACATCGGCCTGCTCCAGGGTTTGTGCGGCAATTCTCTCCAGTTGCGCAGGCGCGAGCCGGGCCATGGCGGGTGCGGCCAGGGGCGCCAGTTGTTCGGCGATCATCTTGCCGCGCTGCAGCAGCTGGGTGCGCAGGTCGTTCTGTTGCAGCCAGGTGAAATAGCTACCCAGCACCAGGGCCATCAAG  >  NC_002947/1844446‑1844734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.