New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2364122 | 50 (1.180) | 3 (0.080) | 3/244 | NT | 6.2% | intergenic (‑246/+87) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase |
? | NC_002947 | = 2364139 | 43 (1.080) | intergenic (‑263/+70) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase |
GTTGACGTTGGCAGGCTTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2363970‑2364122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcttCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAG < NC_002947/2364139‑2363996 GTTGACGTTGGCAGGCTTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCC < 4:209571/148‑1 CAGGCTTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCC < 1:40778/137‑1 CAGGCTTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCC > 2:40778/1‑137 TTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG < 5:163378/134‑1 TTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG < 5:167277/134‑1 TTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG > 6:163378/1‑134 TTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAG > 6:167277/1‑134 AACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTCATCCCCCGGCACGCTCAAGCTGGGTGAGAT < 2:44386/148‑1 ACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCT > 3:231096/1‑111 ACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCT < 4:231096/111‑1 TAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTCATCCCCCGGCACGCTCAAGCTGGGT > 3:222124/1‑81 TAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTCATCCCCCGGCACGCTCAAGCTGGGT < 4:222124/81‑1 CAGCTTCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGA < 8:123872/147‑1 AGCTTCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAG < 8:60976/149‑1 AGCTTCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAA < 5:273077/147‑1 AGCTTCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAA > 6:273077/1‑147 GTTGACGTTGGCAGGCTTTTCGTCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2363970‑2364122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcttCATCCCCCGGCACGCTCAAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGGCGCAACGAGAGGCAGGTGGGTTGACGTGAAAG < NC_002947/2364139‑2363996 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |