New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2364122 | 50 (1.180) | 3 (0.080) | 3/244 | NT | 6.2% | intergenic (‑246/+87) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase |
? | NC_002947 | = 2364139 | 43 (1.080) | intergenic (‑263/+70) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase |
TCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGATCATCCGCAGGGCACCGTTCTCGAT > NC_002947/2363992‑2364286 | tcgCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATg > 4:262905/1‑148 (MQ=255) cTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGaagct < 8:60976‑M2/149‑6 (MQ=255) ttCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGaagct < 5:273077‑M2/147‑6 (MQ=255) ttCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGaagct > 6:273077‑M2/1‑142 (MQ=255) tCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGaagctg < 8:123872‑M2/147‑7 (MQ=255) cACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGa < 1:780/148‑1 (MQ=255) cACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGa < 8:204931/148‑1 (MQ=255) aCGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAgg < 3:165740/149‑1 (MQ=255) cGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGt < 7:183349/149‑1 (MQ=255) cccACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCCCAAAGCGGCCCGATCTCACCCAGCATGAGCGTGCCGGGGGGTGAAGCTGGAGGGGAAGGc > 6:16292/1‑149 (MQ=255) aCCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAg > 3:225071/1‑149 (MQ=255) aCCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAg > 3:77953/1‑149 (MQ=255) cTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGtt > 6:58889/1‑149 (MQ=255) cTGCCTCTCGTTGAGCCATGGCTATCGGGTGCAGATCCAGCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACATGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGATGTGAAGGCCAGtt < 5:27151/149‑1 (MQ=255) ccTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTg < 4:225071/147‑1 (MQ=255) tctcGTTGCACCAGGGCTATCGGGTGCAGAGCCCCCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAA‑CTGGAGGTGAAGGCCAGTTGGAAGc > 4:157908/1‑149 (MQ=255) tcGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGATGAAGGCCAGTTGGAAg < 7:60976/147‑1 (MQ=255) ccAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGcc > 2:177364/1‑149 (MQ=255) gggCTATCGGGTCCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAATGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGTAGCGGGCGTGCCCGc < 5:16292/149‑1 (MQ=255) gCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATATGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGc < 3:563/124‑1 (MQ=255) tATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTTATAAGGTGCCGCATAGAGACAGGGCCGCAAAACCGCCCCCAATAAACCCACATGAGCCTGGCGGGGGGGTAAGCGGGGGGGGGAGGCCAGGTGGAACCGCGCGTGCCCCCaaa > 2:244352/1‑148 (MQ=255) tCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCaaaa < 3:262905/147‑1 (MQ=255) tCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAaga < 5:58889/149‑1 (MQ=255) tCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACACGGCCGCAAAGCGGACCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCAGCaaaa > 5:190920/1‑147 (MQ=255) ggTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCCCAAAGCGGCCCGCTCTCACCCCCCGTGAGCGGGCCGGGGGGTGAAGCGGGAGGTGAAGGGCAGTTGGGAGCGGGCGGGGCCGCCAAACAgtg > 6:36686/1‑149 (MQ=255) tGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGaa < 8:133225/124‑1 (MQ=255) tGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGaa > 7:133225/1‑124 (MQ=255) gTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGa < 1:244352/149‑1 (MQ=255) tCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAgtgt < 7:66393/132‑1 (MQ=255) tCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAgtgt > 8:66393/1‑132 (MQ=255) cTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCg < 5:244922/108‑1 (MQ=255) cTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCg > 6:244922/1‑108 (MQ=255) aTACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATcc > 3:154683/1‑149 (MQ=255) tGCCGCATCGAGAAAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCg < 5:64473/129‑1 (MQ=255) tGCCGCATCGAGAAAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCg > 6:64473/1‑129 (MQ=255) ccGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCa < 4:154683/148‑1 (MQ=255) gagaCAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTcag < 5:36686/148‑1 (MQ=255) ggCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCt < 1:177364/149‑1 (MQ=255) gCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCt > 5:56121/1‑108 (MQ=255) gCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCt < 6:56121/108‑1 (MQ=255) ccGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTgccgc > 1:156509/1‑149 (MQ=255) ccGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTgccgc > 5:231142/1‑149 (MQ=255) cGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTgccgcc > 8:31416/1‑149 (MQ=255) gATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCt > 7:186670/1‑133 (MQ=255) gATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCt > 5:195556/1‑133 (MQ=255) gATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCt < 8:186670/133‑1 (MQ=255) gATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCt < 6:195556/133‑1 (MQ=255) aTCTCACCCAGCTTGAGCGTGCCGGGGGATGaagctgggtgagatcgggccgctttgcggccctgtctcgatgcggcaccgtattaaaaaaagcgaccagggtggctctgcacccgatagccctggcgcaacgagaggcaggtgggtt < 2:44386‑M2/148‑118 (MQ=255) aCCCAGCTTGAGCGTGCCGGGGGATGaagctgggtgagatcgggccgctttgcggccctgtctcgatgcggcaccgtatta < 4:222124‑M2/81‑56 (MQ=255) aCCCAGCTTGAGCGTGCCGGGGGATGaagctgggtgagatcgggccgctttgcggccctgtctcgatgcggcaccgtatta > 3:222124‑M2/1‑26 (MQ=255) aCCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGa < 4:191095/148‑1 (MQ=255) ccAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGatca > 2:159381/1‑149 (MQ=255) aGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGATCATCCGCAg < 4:77953/148‑1 (MQ=255) gCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGATCATCCGCAggg > 7:151854/1‑149 (MQ=255) ccGGGGGATGAAGCTGGAGGTGAAGGACAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGATCATCCGCAGGGCACCg > 7:162616/1‑149 (MQ=255) tGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGTCGCCGGCGGATCATCCGCAGGGCACCGTTCTCGAt < 1:176617/149‑1 (MQ=255) | TCGCCTTTCACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGCCAGTTGGAAGCGGGCGTGCCCGCAAAAGAGTGTGCACGCCCAGGGGCGATCTTTAGAAATCCGCCTCCAGGCTCAGCAGGTCCTGCACCGTCTGCCGCCGGCGGATCATCCGCAGGGCACCGTTCTCGAT > NC_002947/2363992‑2364286 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |