| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3118551 | 41 (0.970) | 4 (0.100) | 4/250 | NT | 8.8% | coding (31/1188 nt) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| ? | NC_002947 | = 3118616 | 43 (1.050) | intergenic (‑35/+15) | cfa/PP_2735 | cyclopropane‑fatty‑acyl‑phospholipid synthase/hypothetical protein | |||||
CCGTGAATGTAGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3118400‑3118551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGCCACCTGCGCCTGCTCAGCCACGGGCAGCAGTGGAGTTTCGGTGATGCCGACAGCCCGTTGCAGGCCGAGGTGGAGATC < NC_002947/3118616‑3118471 CCGTGAATGTAGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTG > 6:42224/1‑149CCGTGAATGTAGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTAAGCAGGCGCAGGTG > 7:100225/1‑149 GTGAATGTAGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGA‑TCGGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGC > 5:179597/1‑149 AGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGATTCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCTTGCGC > 1:48329/1‑149 GATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCC < 1:255278/126‑1 GATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCC > 2:255278/1‑126 GATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGC < 2:48329/149‑1 CACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGCC > 7:214466/1‑144 CACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGCC < 8:214466/144‑1 GCCTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGCCACCTGCGCCTGCTCAGCCACGGGCAGCAGTGGAGTTTCGGTGATGCCGACAGCCCGTTGCAGGCCGAGGTGGAGATC > 8:54947/1‑149 CCGTGAATGTAGGCTTCGCCAGCTCCGATCGAGCCATTGCCGGCGA‑TCAGGCTCCAGGTGGCGTCATCGAGGATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3118400‑3118551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTTGCGCCCCTGCTCGGCGGGCTGGCACGAAGCGCCGTGCTCGCCCAGTTGAGCAAGCTGCGTCACGGCCACCTGCGCCTGCTCAGCCACGGGCAGCAGTGGAGTTTCGGTGATGCCGACAGCCCGTTGCAGGCCGAGGTGGAGATC < NC_002947/3118616‑3118471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |