New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3118551	41 (0.970)	4 (0.100)	4/250	NT	8.8%	coding (31/1188 nt)	cfa	cyclopropane‑fatty‑acyl‑phospholipid synthase
	?	NC_002947	= 3118616	43 (1.050)					intergenic (‑35/+15)	cfa/PP_2735	cyclopropane‑fatty‑acyl‑phospholipid synthase/hypothetical protein

GATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAGCGCTTGCCAGTA  >  NC_002947/3118471‑3118759                                                                                                                                                  |                                                                                                                                                gATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAggc                                                                                                                                              >  8:54947‑M2/1‑146 (MQ=255)      ccACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGc                                                                                                                                          >  7:196575/1‑148 (MQ=255)       cACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAACCTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGc                                                                                                                                          <  2:142204/147‑1 (MQ=255)       cACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCt                                                                                                                                            <  6:179597/145‑1 (MQ=255)       cACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCt                                                                                                                                            <  5:235564/145‑1 (MQ=255)       cACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCg                                                                                                                                         >  3:192055/1‑148 (MQ=255)             ggCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACtt                                                                                                                                    <  5:42224/147‑1 (MQ=255)             ggCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGc                                                                                                                                  <  4:192055/149‑1 (MQ=255)               ccTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCt                                                                                                                                 >  6:37048/1‑148 (MQ=255)                       gggCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAg                                                                                                                        <  5:37048/149‑1 (MQ=255)                        ggCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAgg                                                                                                                       >  3:32230/1‑149 (MQ=255)                             tCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTg                                                                                                                    <  8:2049/147‑1 (MQ=255)                                gCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGAtt                                                                                                               >  8:150902/1‑149 (MQ=255)                                     aCCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGc                                                                                                                                  <  6:193288/125‑1 (MQ=255)                                     aCCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGc                                                                                                                                  >  5:193288/1‑125 (MQ=255)                                       cGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGAcatc                                                                                                        <  7:150902/149‑1 (MQ=255)                                             tCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAg                                                                                                  >  2:29576/1‑149 (MQ=255)                                                    ctgcCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTc                                                                                            <  8:196575/148‑1 (MQ=255)                                                    ctgcCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCg                                                                                           >  2:101219/1‑149 (MQ=255)                                                       cccGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCaa                                                                                        <  5:2071/149‑1 (MQ=255)                                                           tGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGtt                                                                                    >  5:100054/1‑149 (MQ=255)                                                             gCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTg                                                                                   <  4:32230/148‑1 (MQ=255)                                                               tGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGa                                                                                                                 <  6:25095/116‑1 (MQ=255)                                                               tGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGa                                                                                                                 >  5:25095/1‑116 (MQ=255)                                                               tGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGcc                                                                                >  3:8445/1‑149 (MQ=255)                                                                 aGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGcc                                                                                <  6:55819/147‑1 (MQ=255)                                                                          aGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGt                                                                     >  7:101318/1‑149 (MQ=255)                                                                              ggCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAggccacctgcgcctgctcagccacgggcagcagtggagtttcggtgatgccgacagcccgttgcaggccgaggtg                                                                      <  8:214466‑M2/144‑76 (MQ=255)                                                                              ggCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAggccacctgcgcctgctcagccacgggcagcagtggagtttcggtgatgccgacagcccgttgcaggccgaggtg                                                                      >  7:214466‑M2/1‑69 (MQ=255)                                                                               gCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAggccacctgcgcctgctcagccacgggcagcagtggagtttcggtgatgccgacagcccgttgcaggccgaggtggagatc                                                                <  2:48329‑M2/149‑82 (MQ=255)                                                                                     aCGCAGCTTGCTCAACTGGGCGAGGACGGCGCTTCGTTCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCa                                                           <  6:12953/148‑1 (MQ=255)                                                                                     aCGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCa                                                           <  3:188368/148‑1 (MQ=255)                                                                                            ttGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGcc                                                                                >  1:241599/1‑120 (MQ=255)                                                                                             tGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGgtggtgtg                                                  >  5:134773/1‑149 (MQ=255)                                                                                              gCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGgtggtgt                                                   <  8:101318/147‑1 (MQ=255)                                                                                                tCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTc                                               <  8:100225/149‑1 (MQ=255)                                                                                                  aaCTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCAt                                             >  8:18241/1‑149 (MQ=255)                                                                                                  aaCTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCAt                                             >  2:143965/1‑149 (MQ=255)                                                                                                   aCTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGc                                                                                                                                  >  5:228201/1‑63 (MQ=255)                                                                                                   aCTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGc                                                                                                                                  <  6:228201/63‑1 (MQ=255)                                                                                                          gAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACgggg                                     <  6:100054/149‑1 (MQ=255)                                                                                                                ggCGCTTCGTGCCAGCCCGGCGAGCAGGGGCGCAAGGCCTGCGTACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGt                               <  2:81352/149‑1 (MQ=255)                                                                                                                    cTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGa                           <  1:143965/149‑1 (MQ=255)                                                                                                                          gCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTaa                       >  5:4149/1‑147 (MQ=255)                                                                                                                          gCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGGTTGAGTAACa                     <  6:134773/149‑1 (MQ=255)                                                                                                                           ccAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACa                     <  4:8445/148‑1 (MQ=255)                                                                                                                              gCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGc                                 >  7:134455/1‑133 (MQ=255)                                                                                                                              gCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGc                                 <  8:134455/133‑1 (MQ=255)                                                                                                                                  gccgAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGATCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAgc             <  1:181111/149‑1 (MQ=255)                                                                                                                                          ggggCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAGCGCTTGCCa     <  1:101219/149‑1 (MQ=255)                                                                                                                                             gcgcAAggccacctgcgcctgctcagccacgggcagcagtggagtttcggtgatgccgacagcccgttgcaggccgaggtggagatcctcgatgacgccacctggagcctgaatcgccggcaatggctcgatcggagctggcgaagcct  >  1:48329‑M2/1‑6 (MQ=255)                                                                                                                                             gcgcAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAGCGCTTGCCAg    >  7:226908/1‑147 (MQ=255)                                                                                                                                             gcgcAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAGCGCTTGCCAGTa  <  1:29576/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                GATCTCCACCTCGGCCTGCAACGGGCTGTCGGCATCACCGAAACTCCACTGCTGCCCGTGGCTGAGCAGGCGCAGGTGGCCGTGACGCAGCTTGCTCAACTGGGCGAGCACGGCGCTTCGTGCCAGCCCGCCGAGCAGGGGCGCAAGGCCTGCGAACTTGCTAACGCTCAGGGTGGGATTTGACATCATCAAGGTCCTCGCAAGGTTGGCCGAGTGCCAGGTCACCCTGGCAGGTGGTGTGGTCATGCACGGGGGTGCGTTTGAGTAACAGGCGCAGCGCTTGCCAGTA  >  NC_002947/3118471‑3118759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.