New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3601262	42 (0.990)	3 (0.070)	3/246	NT	6.1%	intergenic (‑70/‑22)	PP_3176/PP_3177	MFS transporter/hypothetical protein
	?	NC_002947	= 3601318	52 (1.290)					coding (35/1170 nt)	PP_3177	hypothetical protein

CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3601109‑3601262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggCACAGCAGCCTGGGCCAAGC‑GCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCC  <  NC_002947/3601318‑3601173                                                                                                                                                                                                                                                                                                               CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTC                                                                                                                                                          <  3:46613/149‑1          CCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCA                                                                                                                                                   >  5:233551/1‑147                                                         CTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGC‑GCTGTGCAAAAGCACAAAGACAGGCTAGCCG                                                                                                 >  3:30769/1‑149                                                                   GGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGC‑GCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGA                                                                                       <  4:30769/149‑1                                                                        GGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGC‑GCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTC                                                                                  <  6:233551/149‑1                                                                                                                                                        ttGCACAGC‑GCTTGGCCCAGGCTGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCC  >  4:193470/3‑149                                                                                                                                                                                                                                                                                                               CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3601109‑3601262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggCACAGCAGCCTGGGCCAAGC‑GCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCC  <  NC_002947/3601318‑3601173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.