New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3601262	42 (0.990)	3 (0.070)	3/246	NT	6.1%	intergenic (‑70/‑22)	PP_3176/PP_3177	MFS transporter/hypothetical protein
	?	NC_002947	= 3601318	52 (1.290)					coding (35/1170 nt)	PP_3177	hypothetical protein

GCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCGGGCAATGG  >  NC_002947/3601117‑3601407                                                                                                                                                    |                                                                                                                                                   gCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGAc                                                                                                                                                 >  3:193470/1‑149 (MQ=255)  ccGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGca                                                                                                                                                  >  5:233551‑M1/1‑145 (MQ=255)  ccGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACt                                                                                                                                                >  1:156219/1‑149 (MQ=255)    gCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGc                                                                                                                                              <  4:220245/149‑1 (MQ=255)     cAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCg                                                                                                                                             >  6:235031/1‑149 (MQ=255)       aGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGc                                                                                                                                           <  7:203148/149‑1 (MQ=255)         gTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCATGTTCCGGCGCTCGCCCTGAAGAGTCTCGGGGACTGCGGCtc                                                                                                                                         >  6:188240/1‑148 (MQ=255)               cgcCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGt                                                                                                                                   <  3:154559/149‑1 (MQ=255)                            cgTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCTTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTg                                                                                                                      <  1:56735/149‑1 (MQ=255)                            cgTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTg                                                                                                                      <  6:224345/149‑1 (MQ=255)                                 cGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAg                                                                                                                 >  7:222710/1‑149 (MQ=255)                                   ggtggtGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTGCTCTGTTGTTATGGTTTTCGCCGCGCTCCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAg                                                                                                                 <  1:218858/149‑1 (MQ=255)                                         gtCCGTGCCTTGGTCAGGGGCGGGCCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGGGCTAGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGc                                                                                                        <  5:188240/149‑1 (MQ=255)                                                 cTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGcacagcagcctgggccaagcgctgtgcaaaagcacaaagacaggctagccg                                                                                                 >  3:30769‑M1/1‑98 (MQ=255)                                                 cTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGgctg                                                                                                >  4:207289/1‑149 (MQ=255)                                                      tCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCtgtg                                                                                           >  5:196691/1‑149 (MQ=255)                                                         ggggcggggcTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGCAGCCTGGGCCAAGC‑GCTGTGcaa                                                                                        >  4:193470‑M2/1‑146 (MQ=255)                                                           ggcggggcTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGcacagcagcctgggccaagcgctgtgcaaaagcacaaagacaggctagccgcagtccccga                                                                                       <  4:30769‑M1/149‑62 (MQ=255)                                                                ggcTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGcacagcagcctgggccaagcgctgtgcaaaagcacaaagacaggctagccgcagtccccgagactc                                                                                  <  6:233551‑M1/149‑67 (MQ=255)                                                                     tgtgCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCaaaa                                                                              <  2:165297/147‑1 (MQ=255)                                                                     tgtgCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCaaaa                                                                              <  6:196691/147‑1 (MQ=255)                                                                     tgtgCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTACGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGc                                                                            <  6:100758/149‑1 (MQ=255)                                                                       tgCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGcc                                                                           <  5:235031/148‑1 (MQ=255)                                                                         ccATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTtgt                                                                                                                             <  6:172577/97‑1 (MQ=255)                                                                         ccATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTtgt                                                                                                                             >  5:172577/1‑97 (MQ=255)                                                                          cATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGc                                                                                    <  1:258575/136‑1 (MQ=255)                                                                          cATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGc                                                                                    >  2:258575/1‑136 (MQ=255)                                                                          cATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGAGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCaaa                                                                        >  6:156402/1‑148 (MQ=255)                                                                             gATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAacac                                                                     >  7:80929/1‑148 (MQ=255)                                                                                 gggTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTaa                                                                 <  3:207289/148‑1 (MQ=255)                                                                                  ggTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAg                                                               >  2:37987/1‑149 (MQ=255)                                                                                      ctctGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTTGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGAcc                                                           >  3:114156/1‑149 (MQ=255)                                                                                            tgttATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCaa                                                     >  2:137628/1‑149 (MQ=255)                                                                                              ttATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATg                                                   >  1:262193/1‑149 (MQ=255)                                                                                                 tGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTc                                                <  2:154171/149‑1 (MQ=255)                                                                                                    ttttCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGaa                                             >  3:47191/1‑149 (MQ=255)                                                                                                         gccgcG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGAccc                                                          >  7:123551/1‑131 (MQ=255)                                                                                                         gccgcG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGAccc                                                          <  8:123551/131‑1 (MQ=255)                                                                                                            gcg‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCa                                     >  4:240685/1‑149 (MQ=255)                                                                                                              g‑T‑CGCTTGTTCCGGCTCTCGCCCTGACGAGGCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATg                                   <  8:222710/149‑1 (MQ=255)                                                                                                              g‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATg                                   <  6:4877/149‑1 (MQ=255)                                                                                                                           cGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAg                        <  4:47191/149‑1 (MQ=255)                                                                                                                                   gCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACGTGGCGCAGGATATCGt                <  8:80929/149‑1 (MQ=255)                                                                                                                                   gCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCg                 <  2:156219/148‑1 (MQ=255)                                                                                                                                    cccTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGAGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGtt               <  5:156402/149‑1 (MQ=255)                                                                                                                                     ccTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCAAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGtt               >  1:218200/1‑148 (MQ=255)                                                                                                                                         aCGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCTCAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGAcc           <  3:240685/148‑1 (MQ=255)                                                                                                                                           gAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGcccgagactcgtcagggcgagcgccggaacaggcgacgcggcgaaaaccataacaacagagaacccgatcatggcacacagcc        <  6:233551‑M2/149‑84 (MQ=255)                                                                                                                                           gAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCggg        <  2:262193/149‑1 (MQ=255)                                                                                                                                              tctcGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCGGGCaa     >  3:87807/1‑149 (MQ=255)                                                                                                                                                tcGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGcccgagactcgtcagggcgagcgccggaacaggcgacgcggcgaaaaccataacaacagagaacccgatcatggcacacagccccgcc   <  4:30769‑M2/149‑89 (MQ=255)                                                                                                                                                tcGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCGGGCAATg   >  1:226392/1‑149 (MQ=255)                                                                                                                                                  ttgcacagcgcttggcccaggctgctgtgcaaaagcacaaagacaggctagccgcagtccccgagactcgtcagggcgagcgccggaacaggcgacgcggcgaaaaccataacaacagagaacccgatcatggcacacagccccgcccc  >  4:193470‑M1/3‑3 (MQ=255)                                                                                                                                                  ggggACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCGGGCAATg   <  1:37987/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCG‑T‑CGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGGACTGCGGCTAGCCTGTCTTTGTGCTTTTGCACAGC‑GCTTGGCCCAGGCTGCTGTGCCCGAGCCCAAAAGCCAAACACCTAAAGGACCCCGCAATGTTCGAACTCGACCATGACCTGGCGCAGGATATCGTTGACCGGGCAATGG  >  NC_002947/3601117‑3601407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.