New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3641049 = | 50 (1.180) | 4 (0.100) | 3/246 | NT | 7.4% | coding (729/945 nt) | PP_3208 | Pdr/VanB family oxidoreductase |
? | NC_002947 | 3641112 = | 52 (1.290) | coding (666/945 nt) | PP_3208 | Pdr/VanB family oxidoreductase |
GGCGTGTGTCGAACGCGTCGCGCTTGCAAGCGGCTGGCCAACCACGGCGCTTCACCGCGAACATTTCCAGGCCTCAGAGCCCACCTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3641196‑3641049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaaGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCC > NC_002947/3641112‑3641259 GGCGTGTGTCGAACGCGTCGCGCTTGCAAGCGGCTGGCCAACCACGGCGCTTCACCGCGAACATTTCCAGGCCTCAGAGCCCACCTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGT > 5:126574/1‑144 GGCGTGTGTCGAACGCGTCGCGCTTGCAAGCGGCTGGCCAACCACGGCGCTTCACCGCGAACATTTCCAGGCCTCAGAGCCCACCTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGT < 6:126574/144‑1 ACCTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACG > 2:147786/1‑149 CTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGC > 3:95728/1‑148 CTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTT > 7:240691/1‑138 CTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTT < 8:240691/138‑1 TGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTG > 6:2561/1‑149 GCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGT > 4:54101/1‑149 AGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCC < 1:147786/149‑1 GGCGTGTGTCGAACGCGTCGCGCTTGCAAGCGGCTGGCCAACCACGGCGCTTCACCGCGAACATTTCCAGGCCTCAGAGCCCACCTTGCACGTCGAGCGTCACTGCACGCTGGTGCTACAGCGCAGTCGTCTTCAGGTCGAGGTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3641196‑3641049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaaGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACACGCCATGAAACCGGCAGGGCCACAGCAATAGAGGCTTGCGCTGCCGTCCCAGGCCGGCAAGTGTTCC > NC_002947/3641112‑3641259 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |