New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3641049 =	50 (1.180)	4 (0.100)	3/246	NT	7.4%	coding (729/945 nt)	PP_3208	Pdr/VanB family oxidoreductase
	?	NC_002947	3641112 =	52 (1.290)					coding (666/945 nt)	PP_3208	Pdr/VanB family oxidoreductase

TGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACA  >  NC_002947/3640901‑3641192                                                                                                                                                     |                                                                                                                                                ggaacacttgccggcctgggacggcagcgcaagcctctattgctgtggccctgccggtttcatggcgtgtgtcgaacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccacct                                                                                                                                                 <  1:147786‑M1/1‑1 (MQ=255)    acacttgccggcctgggacggcagcgcaagcctctattgctgtggccctgccggtttcatggcgtgtgtcgaacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGc                                                                                                                                              >  4:54101‑M1/146‑149 (MQ=255)     cacttgccggcctgggacggcagcgcaagcctctattgctgtggccctgccggtttcatggcgtgtgtcgaacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGCa                                                                                                                                             >  6:2561‑M1/145‑149 (MQ=255)     cTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCa                                                                                                                                             >  7:241689/1‑149 (MQ=255)                 gAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGAc                                                                                                                                      >  8:92308/1‑144 (MQ=255)                 gAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGAc                                                                                                                                      <  7:92308/144‑1 (MQ=255)                  aGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAg                                                                                                                                <  4:146509/149‑1 (MQ=255)                   ggTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAga                                                                                                                               <  5:81171/149‑1 (MQ=255)                        tCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACt                                                                                                                          >  7:84985/1‑149 (MQ=255)                        tCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACt                                                                                                                          >  7:61257/1‑149 (MQ=255)                           tCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTgcg                                                                                                                       <  4:67279/149‑1 (MQ=255)                                 tGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAg                                                                                                                 >  2:25425/1‑149 (MQ=255)                                   aTCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGCTACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTCGCa                                                                                                               >  2:46979/1‑149 (MQ=255)                                    tCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCAc                                                                                                              <  8:61257/149‑1 (MQ=255)                                        gcgcCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGCCTGCGCTGTAGCACCAGc                                                                                                          >  5:264264/1‑149 (MQ=255)                                           cccccTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAgacgac                                                                                                                           >  8:222341/1‑129 (MQ=255)                                           cccccTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAgacgac                                                                                                                           <  7:222341/129‑1 (MQ=255)                                                tCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGt                                                                                                   >  4:88182/1‑148 (MQ=255)                                                  gATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACATGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGAc                                                                                                >  5:228089/1‑149 (MQ=255)                                                         cGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGc                                                                                                      >  4:15518/1‑136 (MQ=255)                                                         cGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTACCACCAGCGTGc                                                                                                      <  3:15518/136‑1 (MQ=255)                                                                 gcgtgtgtcgaacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAg                                                                                  >  3:95728‑M1/85‑148 (MQ=255)                                                                  cgtgtgtcgaacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGt                                                                                >  2:147786‑M1/84‑149 (MQ=255)                                                                   aGGCGCCGCATATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTg                                                                               <  6:220160/149‑1 (MQ=255)                                                                   aGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGt                                                                                <  3:208577/148‑1 (MQ=255)                                                                   aGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGt                                                                                >  4:208577/1‑148 (MQ=255)                                                                   aGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTg                                                                               >  6:195060/1‑149 (MQ=255)                                                                     gcgcCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTggg                                                                             >  4:89258/1‑149 (MQ=255)                                                                           aacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAg                                                                                  >  7:240691‑M1/75‑138 (MQ=255)                                                                           aacgcgtcgcgcttgcaagcggctggccaaccacggcgcttcaccgcgaacatttccaggcctcagagcccaccTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAg                                                                                  <  8:240691‑M1/64‑1 (MQ=255)                                                                                     ttCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCCCCTCGCCCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGaaa                                                             >  4:48592/1‑149 (MQ=255)                                                                                       ccaccagACACCGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACATTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAAt                                                            <  8:48806/142‑1 (MQ=255)                                                                                         acaTGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGtt                                                         >  4:175463/1‑149 (MQ=255)                                                                                            tGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTcgc                                                      <  3:175463/149‑1 (MQ=255)                                                                                            tGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTcgc                                                      <  8:84985/149‑1 (MQ=255)                                                                                              acacGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTcgcg                                                     <  3:48592/148‑1 (MQ=255)                                                                                              acacGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTcgcg                                                     <  4:239689/148‑1 (MQ=255)                                                                                               cacGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCgg                                                    <  5:195060/148‑1 (MQ=255)                                                                                                acGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGAGGGCTCTGAGGCCTGGAAATGTTCGCGGTg                                                  <  1:25425/149‑1 (MQ=255)                                                                                                        cTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGc                                                                                     <  8:232882/106‑1 (MQ=255)                                                                                                        cTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGc                                                                                     >  7:232882/1‑106 (MQ=255)                                                                                                        cTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATCTTCGCGGTGAAGCTCCg                                          >  8:247431/1‑149 (MQ=255)                                                                                                         tCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGt                                         >  2:121752/1‑149 (MQ=255)                                                                                                               cccgccagCGATGCCGACTGTAACAAACTTTCGCCGGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTgg                                   <  6:228089/149‑1 (MQ=255)                                                                                                                ccgcccgcGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGCAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGc                                  <  8:241689/149‑1 (MQ=255)                                                                                                                    ccgcGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAg                                                                                  <  5:185626/97‑1 (MQ=255)                                                                                                                    ccgcGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAg                                                                                  >  6:185626/1‑97 (MQ=255)                                                                                                                        gATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCt                          <  3:88182/149‑1 (MQ=255)                                                                                                                         aTGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCtt                         <  4:257468/149‑1 (MQ=255)                                                                                                                           gccgccTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTg                        >  4:120383/1‑148 (MQ=255)                                                                                                                             cgccTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGc                       >  4:173243/1‑147 (MQ=255)                                                                                                                              gccTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGTAAGGTGGGCTCTGAGGCCTGGa                                                               <  5:51507/106‑1 (MQ=255)                                                                                                                              gccTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGTAAGGTGGGCTCTGAGGCCTGGa                                                               >  6:51507/1‑106 (MQ=255)                                                                                                                                   tACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGa               <  1:121752/149‑1 (MQ=255)                                                                                                                                       aaaCTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTTGCGGTGAAGTGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGAcgcg           >  6:130879/1‑149 (MQ=255)                                                                                                                                           tttCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAgcgc                 >  6:47451/1‑139 (MQ=255)                                                                                                                                           tttCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAgcgc                 <  5:47451/139‑1 (MQ=255)                                                                                                                                           tttCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTc        >  3:249192/1‑148 (MQ=255)                                                                                                                                                cccGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGacaca  >  7:176345/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                TGCGCTGGGCATCGCTGAGGTACTCATCGCGGTGATCAGGCGCCCCCTCGATGACCCGGCTGACACAGGCGCCGCAGATACCCATTCCACATGACACGGGTAGCTCCACGCCCGCCCGCGATGCCGCCTGTACCAAACTTTCGCCCGGTTGCACCTCGACCTGAAGACGACTGCGCTGTAGCACCAGCGTGCAGTGACGCTCGACGTGCAAGGTGGGCTCTGAGGCCTGGAAATGTTCGCGGTGAAGCGCCGTGGTTGGCCAGCCGCTTGCAAGCGCGACGCGTTCGACACA  >  NC_002947/3640901‑3641192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.